STRINGSTRING
txnl4b txnl4b snrpb2 snrpb2 eftud2 eftud2 rbm41 rbm41 prpf31 prpf31 mfap1 mfap1 LOC111645818 LOC111645818 ENSSLDP00000004938 ENSSLDP00000004938 LOC111646107 LOC111646107 sf3b6 sf3b6 LOC111664005 LOC111664005 snrpc snrpc Snrpf Snrpf LOC111657240 LOC111657240 txnl4a txnl4a ENSSLDP00000007523 ENSSLDP00000007523 SMU1 SMU1 sf3b2 sf3b2 rnpc3 rnpc3 prpf4 prpf4 zmat2 zmat2 daw1 daw1 snrpd2 snrpd2 snrnp70 snrnp70 phf5a phf5a snrnp40 snrnp40 rbm42 rbm42 ddx23 ddx23 sf3a2 sf3a2 snrnp200 snrnp200 ENSSLDP00000013842 ENSSLDP00000013842 ENSSLDP00000014266 ENSSLDP00000014266 LOC111662189 LOC111662189 snrpd1 snrpd1 zcrb1 zcrb1 zmat5 zmat5 sf3a1 sf3a1 wbp4 wbp4 LOC111667977 LOC111667977 sf3b4 sf3b4 sf3b5 sf3b5 snrnp27 snrnp27 prpf38a prpf38a snrpe snrpe prpf3 prpf3 snrpg snrpg ik ik UBL5 UBL5 hfm1 hfm1 TCERG1 TCERG1 ddx46 ddx46 usp39 usp39 prpf8 prpf8 ENSSLDP00000022047 ENSSLDP00000022047 sf3b3 sf3b3 wbp11 wbp11 cd2bp2 cd2bp2 ddx42 ddx42 sf3b1 sf3b1 wdr53 wdr53 sf3a3 sf3a3 snrpa snrpa LOC111655303 LOC111655303 snrpb snrpb snrpd3 snrpd3 LOC111648066 LOC111648066 snrpa1 snrpa1 SART1 SART1 ppih ppih pqbp1 pqbp1 prpf6 prpf6 ENSSLDP00000033381 ENSSLDP00000033381
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
txnl4bThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (211 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (974 aa)
rbm41RNA binding motif protein 41. (439 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (481 aa)
mfap1Microfibril associated protein 1. (441 aa)
LOC111645818Sm domain-containing protein. (82 aa)
ENSSLDP00000004938PWI domain-containing protein. (195 aa)
LOC111646107Small nuclear ribonucleoprotein G. (73 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
LOC111664005SMU1 DNA replication regulator and spliceosomal factor b. (497 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (148 aa)
SnrpfSmall nuclear ribonucleoprotein polypeptide F. (86 aa)
LOC111657240Protein kinase domain-containing protein. (256 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
ENSSLDP00000007523Uncharacterized protein. (184 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
sf3b2Splicing factor 3b, subunit 2. (886 aa)
rnpc3RNA-binding region (RNP1, RRM) containing 3. (513 aa)
prpf4PRP4 pre-mRNA processing factor 4 homolog (yeast). (514 aa)
zmat2Zinc finger, matrin-type 2. (212 aa)
daw1WD_REPEATS_REGION domain-containing protein. (452 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
snrnp70Small nuclear ribonucleoprotein 70 (U1). (490 aa)
phf5aPHD finger protein 5A. (110 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
rbm42RNA binding motif protein 42. (369 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (806 aa)
sf3a2Splicing factor 3a, subunit 2. (292 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2136 aa)
ENSSLDP00000013842Uncharacterized protein. (62 aa)
ENSSLDP00000014266Uncharacterized protein. (148 aa)
LOC111662189Uncharacterized protein. (91 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
zcrb1Zinc finger CCHC-type and RNA binding motif 1. (211 aa)
zmat5Zinc finger, matrin-type 5. (168 aa)
sf3a1Splicing factor 3a, subunit 1. (785 aa)
wbp4Uncharacterized protein. (415 aa)
LOC111667977Uncharacterized protein. (200 aa)
sf3b4Splicing factor 3b, subunit 4. (403 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
snrnp27Small nuclear ribonucleoprotein 27 (U4/U6.U5). (161 aa)
prpf38aPre-mRNA processing factor 38A. (309 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (711 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
ikIK cytokine. (512 aa)
UBL5Ubiquitin like 5. (73 aa)
hfm1Helicase for meiosis 1. (870 aa)
TCERG1Transcription elongation regulator 1. (994 aa)
ddx46DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (1063 aa)
usp39Ubiquitin specific peptidase 39. (500 aa)
prpf8Pre-mRNA processing factor 8. (1598 aa)
ENSSLDP00000022047Small nuclear ribonucleoprotein 35 (U11/U12). (213 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
wbp11WW domain binding protein 11. (735 aa)
cd2bp2CD2 (cytoplasmic tail) binding protein 2. (381 aa)
ddx42DEAD (Asp-Glu-Ala-Asp) box helicase 42. (894 aa)
sf3b1Splicing factor 3b, subunit 1. (1314 aa)
wdr53WD repeat domain 53. (392 aa)
sf3a3Splicing factor 3a, subunit 3. (501 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (312 aa)
LOC111655303Leucine rich repeat containing 51. (179 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (240 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
LOC111648066DEAQ box RNA-dependent ATPase 1. (795 aa)
snrpa1Small nuclear ribonucleoprotein polypeptide A. (259 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (771 aa)
ppihPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (225 aa)
pqbp1Polyglutamine binding protein 1. (223 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (970 aa)
ENSSLDP00000033381Leucine rich melanocyte differentiation associated. (228 aa)
Your Current Organism:
Seriola lalandi
NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis
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