87 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSLDP00000000092	C1q domain-containing protein. (304 aa)
	LOC111662067	Transducin beta like 1 X-linked. (480 aa)
	LOC111672753	WD_REPEATS_REGION domain-containing protein. (630 aa)
	TBL1XR1	Transducin beta like 1 X-linked receptor 1. (550 aa)
	ENSSLDP00000001702	Uncharacterized protein. (86 aa)
	ENSSLDP00000002046	Uncharacterized protein; Belongs to the beta/gamma-crystallin family. (657 aa)
	c1ql2	Complement component 1, q subcomponent-like 2. (229 aa)
	LOC111666493	Uncharacterized protein. (357 aa)
	LOC111670639	Ataxin 7-like 2b. (686 aa)
	ENSSLDP00000003560	Uncharacterized protein. (271 aa)
	LOC111659740	Lysozyme g. (190 aa)
	LOC111659749	Pyrin domain-containing protein. (290 aa)
	sac3d1	Si:zfos-452g4.1. (410 aa)
	LOC111667124	Ubiquitin carboxyl-terminal hydrolase. (393 aa)
	usp12	Ubiquitin specific peptidase 12a; Belongs to the peptidase C19 family. (372 aa)
	LOC111656150	BTP domain-containing protein. (305 aa)
	trrap	Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family. (3843 aa)
	ENSSLDP00000006226	C1q domain-containing protein. (250 aa)
	C1QL2	C1q domain-containing protein. (242 aa)
	usp44	Ubiquitin carboxyl-terminal hydrolase. (745 aa)
	LOC111657976	DM1 locus, WD repeat containing. (683 aa)
	ENSSLDP00000008351	Uncharacterized protein. (139 aa)
	LOC111649926	RING-type domain-containing protein. (4289 aa)
	TADA1	Transcriptional adaptor 1. (336 aa)
	tada2a	Transcriptional adapter. (445 aa)
	LOC111650607	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (96 aa)
	LOC111648163	Uncharacterized protein. (262 aa)
	col11a1	Collagen, type XI, alpha 1a. (1809 aa)
	LOC111660439	C1q domain-containing protein. (220 aa)
	ENSSLDP00000010932	VWFA domain-containing protein. (238 aa)
	ENSSLDP00000011372	LYN proto-oncogene, Src family tyrosine kinase. (531 aa)
	LOC111670820	STAGA complex 65 subunit gamma-like. (255 aa)
	ENSSLDP00000012909	C1q domain-containing protein. (213 aa)
	ENSSLDP00000013081	Uncharacterized protein. (271 aa)
	LOC111652332	Uncharacterized protein. (147 aa)
	LOC111661118	Uncharacterized protein. (475 aa)
	eny2	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (124 aa)
	tada3	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like. (431 aa)
	coil	Coilin p80. (537 aa)
	LOC111661178	Collagen, type XI, alpha 2. (2147 aa)
	ENSSLDP00000014880	Uncharacterized protein. (76 aa)
	clmn	Calmin. (1114 aa)
	ENSSLDP00000015387	C1q domain-containing protein. (150 aa)
	sgf29	SAGA complex associated factor 29. (290 aa)
	ENSSLDP00000015865	Uncharacterized protein. (534 aa)
	ENSSLDP00000015889	Uncharacterized protein. (279 aa)
	LOC111669803	Cerebellin 17. (199 aa)
	LOC111666114	Bromo domain-containing protein. (1445 aa)
	LOC111647381	Nuclear receptor subfamily 1, group d, member 1. (580 aa)
	atxn7	Ataxin 7. (949 aa)
	pcid2	PCI domain containing 2. (391 aa)
	ncor2	Nuclear receptor corepressor 2. (2259 aa)
	LOC111661257	Transducin (beta)-like 1 X-linked receptor 1b. (513 aa)
	supt7l	SPT7 like, STAGA complex gamma subunit. (431 aa)
	ENSSLDP00000020244	Uncharacterized protein. (278 aa)
	hdac11	Histone deacetylase 11. (370 aa)
	LOC111664927	Fibronectin type-III domain-containing protein. (119 aa)
	tada2b	Transcriptional adapter. (418 aa)
	supt3h	SPT3 homolog, SAGA and STAGA complex component. (339 aa)
	mcm3ap	Minichromosome maintenance complex component 3 associated protein. (1905 aa)
	kmt2e	Lysine (K)-specific methyltransferase 2E. (1222 aa)
	atxn7l2	Ataxin 7-like 2a. (793 aa)
	LOC111652241	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. (173 aa)
	ncor1	Nuclear receptor corepressor 1. (2160 aa)
	LOC111655912	WD repeat domain 20a. (534 aa)
	LOC111665676	Uncharacterized protein. (1762 aa)
	LOC111657099	C1q domain-containing protein. (275 aa)
	LOC111656475	Si:ch211-244b2.4. (234 aa)
	ENSSLDP00000026853	Uncharacterized protein. (380 aa)
	ENSSLDP00000026861	Uncharacterized protein. (403 aa)
	LOC111659598	Ubiquitin carboxyl-terminal hydrolase. (506 aa)
	LOC111668294	Growth arrest-specific 2b. (478 aa)
	usp46	Ubiquitin specific peptidase 46; Belongs to the peptidase C19 family. (369 aa)
	LOC111657712	Ubiquitin carboxyl-terminal hydrolase. (522 aa)
	leng8	Leukocyte receptor cluster (LRC) member 8. (855 aa)
	LOC111664445	Centrin 3. (167 aa)
	usp49	Ubiquitin carboxyl-terminal hydrolase. (677 aa)
	LOC111651641	Collagen, type XII, alpha 1a. (3070 aa)
	supt20h	SPT20 homolog, SAGA complex component. (832 aa)
	emilin2	Elastin microfibril interfacer 2b. (999 aa)
	atxn7l3	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. (378 aa)
	usp3	Ubiquitin carboxyl-terminal hydrolase. (623 aa)
	HDAC3	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. (428 aa)
	ENSSLDP00000032250	Collagen, type VII, alpha 1. (2520 aa)
	usp38	Ubiquitin specific peptidase 38; Belongs to the peptidase C19 family. (1036 aa)
	ENSSLDP00000033170	Uncharacterized protein. (150 aa)
	ENSSLDP00000033451	SEM1 26S proteasome complex subunit. (70 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSLDP00000001702	ENSSLDP00000003560	ENSSLDP00000001702	ENSSLDP00000003560	Uncharacterized protein.	Uncharacterized protein.	0.842
ENSSLDP00000001702	ENSSLDP00000013081	ENSSLDP00000001702	ENSSLDP00000013081	Uncharacterized protein.	Uncharacterized protein.	0.428
ENSSLDP00000001702	LOC111648163	ENSSLDP00000001702	ENSSLDP00000009846	Uncharacterized protein.	Uncharacterized protein.	0.428
ENSSLDP00000001702	LOC111655912	ENSSLDP00000001702	ENSSLDP00000024632	Uncharacterized protein.	WD repeat domain 20a.	0.830
ENSSLDP00000001702	LOC111666493	ENSSLDP00000001702	ENSSLDP00000002329	Uncharacterized protein.	Uncharacterized protein.	0.428
ENSSLDP00000001702	LOC111667124	ENSSLDP00000001702	ENSSLDP00000004345	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.771
ENSSLDP00000001702	ncor1	ENSSLDP00000001702	ENSSLDP00000024629	Uncharacterized protein.	Nuclear receptor corepressor 1.	0.428
ENSSLDP00000001702	ncor2	ENSSLDP00000001702	ENSSLDP00000019051	Uncharacterized protein.	Nuclear receptor corepressor 2.	0.428
ENSSLDP00000001702	supt3h	ENSSLDP00000001702	ENSSLDP00000022729	Uncharacterized protein.	SPT3 homolog, SAGA and STAGA complex component.	0.508
ENSSLDP00000001702	tada3	ENSSLDP00000001702	ENSSLDP00000014781	Uncharacterized protein.	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.	0.514
ENSSLDP00000001702	trrap	ENSSLDP00000001702	ENSSLDP00000005869	Uncharacterized protein.	Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.	0.530
ENSSLDP00000001702	usp12	ENSSLDP00000001702	ENSSLDP00000005318	Uncharacterized protein.	Ubiquitin specific peptidase 12a; Belongs to the peptidase C19 family.	0.771
ENSSLDP00000001702	usp38	ENSSLDP00000001702	ENSSLDP00000032864	Uncharacterized protein.	Ubiquitin specific peptidase 38; Belongs to the peptidase C19 family.	0.700
ENSSLDP00000001702	usp46	ENSSLDP00000001702	ENSSLDP00000027351	Uncharacterized protein.	Ubiquitin specific peptidase 46; Belongs to the peptidase C19 family.	0.771
ENSSLDP00000003560	ENSSLDP00000001702	ENSSLDP00000003560	ENSSLDP00000001702	Uncharacterized protein.	Uncharacterized protein.	0.842
ENSSLDP00000003560	ENSSLDP00000013081	ENSSLDP00000003560	ENSSLDP00000013081	Uncharacterized protein.	Uncharacterized protein.	0.428
ENSSLDP00000003560	LOC111648163	ENSSLDP00000003560	ENSSLDP00000009846	Uncharacterized protein.	Uncharacterized protein.	0.428
ENSSLDP00000003560	LOC111652332	ENSSLDP00000003560	ENSSLDP00000013745	Uncharacterized protein.	Uncharacterized protein.	0.884
ENSSLDP00000003560	LOC111666493	ENSSLDP00000003560	ENSSLDP00000002329	Uncharacterized protein.	Uncharacterized protein.	0.428
ENSSLDP00000003560	LOC111667124	ENSSLDP00000003560	ENSSLDP00000004345	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.771