5 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	traf7	TNF receptor-associated factor 7. (654 aa)
	birc6	Baculoviral IAP repeat containing 6. (4866 aa)
	Ubc	Ubiquitin B. (696 aa)
	LOC111671125	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111671125	Ubc	ENSSLDP00000026808	ENSSLDP00000024700	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin B.	0.910
LOC111671125	birc6	ENSSLDP00000026808	ENSSLDP00000023495	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Baculoviral IAP repeat containing 6.	0.981
LOC111671125	traf7	ENSSLDP00000026808	ENSSLDP00000020980	Ubiquitin A-52 residue ribosomal protein fusion product 1.	TNF receptor-associated factor 7.	0.936
LOC111671125	uba52	ENSSLDP00000026808	ENSSLDP00000008990	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.900
Ubc	LOC111671125	ENSSLDP00000024700	ENSSLDP00000026808	Ubiquitin B.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.910
Ubc	birc6	ENSSLDP00000024700	ENSSLDP00000023495	Ubiquitin B.	Baculoviral IAP repeat containing 6.	0.852
Ubc	traf7	ENSSLDP00000024700	ENSSLDP00000020980	Ubiquitin B.	TNF receptor-associated factor 7.	0.892
Ubc	uba52	ENSSLDP00000024700	ENSSLDP00000008990	Ubiquitin B.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.910
birc6	LOC111671125	ENSSLDP00000023495	ENSSLDP00000026808	Baculoviral IAP repeat containing 6.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.981
birc6	Ubc	ENSSLDP00000023495	ENSSLDP00000024700	Baculoviral IAP repeat containing 6.	Ubiquitin B.	0.852
birc6	traf7	ENSSLDP00000023495	ENSSLDP00000020980	Baculoviral IAP repeat containing 6.	TNF receptor-associated factor 7.	0.963
birc6	uba52	ENSSLDP00000023495	ENSSLDP00000008990	Baculoviral IAP repeat containing 6.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.981
traf7	LOC111671125	ENSSLDP00000020980	ENSSLDP00000026808	TNF receptor-associated factor 7.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.936
traf7	Ubc	ENSSLDP00000020980	ENSSLDP00000024700	TNF receptor-associated factor 7.	Ubiquitin B.	0.892
traf7	birc6	ENSSLDP00000020980	ENSSLDP00000023495	TNF receptor-associated factor 7.	Baculoviral IAP repeat containing 6.	0.963
traf7	uba52	ENSSLDP00000020980	ENSSLDP00000008990	TNF receptor-associated factor 7.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.936
uba52	LOC111671125	ENSSLDP00000008990	ENSSLDP00000026808	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.900
uba52	Ubc	ENSSLDP00000008990	ENSSLDP00000024700	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin B.	0.910
uba52	birc6	ENSSLDP00000008990	ENSSLDP00000023495	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Baculoviral IAP repeat containing 6.	0.981
uba52	traf7	ENSSLDP00000008990	ENSSLDP00000020980	Ubiquitin A-52 residue ribosomal protein fusion product 1.	TNF receptor-associated factor 7.	0.936