104 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111652406	Uncharacterized protein. (309 aa)
	ENSSLDP00000000682	6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. (224 aa)
	LOC111659072	Protein disulfide-isomerase. (495 aa)
	ENSSLDP00000001524	Uncharacterized protein; Belongs to the heat shock protein 70 family. (624 aa)
	h6pd	Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase). (791 aa)
	pdia6	Protein disulfide isomerase family A, member 6; Belongs to the protein disulfide isomerase family. (444 aa)
	lrpap1	Low density lipoprotein receptor-related protein associated protein 1. (347 aa)
	p4hb	Protein disulfide-isomerase. (517 aa)
	LOC111666491	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle. (446 aa)
	dnajc3	DnaJ (Hsp40) homolog, subfamily C, member 3a. (503 aa)
	ppib	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (216 aa)
	LOC111662090	UDP-glucose glycoprotein glucosyltransferase 2. (1523 aa)
	poglut1	Protein O-glucosyltransferase 1. (388 aa)
	LOC111646002	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle. (409 aa)
	LOC111653672	Collagen beta(1-O)galactosyltransferase 1. (622 aa)
	ENSSLDP00000003181	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (83 aa)
	sumf1	Sulfatase modifying factor 1. (368 aa)
	ENSSLDP00000003422	J domain-containing protein. (115 aa)
	ENSSLDP00000003459	Uncharacterized protein. (146 aa)
	ENSSLDP00000003501	Uncharacterized protein. (146 aa)
	pdia3	Protein disulfide-isomerase. (497 aa)
	ENSSLDP00000003866	Thioredoxin domain containing 16. (650 aa)
	LOC111647198	DnaJ (Hsp40) homolog, subfamily C, member 3b. (498 aa)
	poglut3	Protein O-glucosyltransferase 3. (520 aa)
	LOC111653709	Zgc:103625. (205 aa)
	tor3a	Torsin family 3, member A. (367 aa)
	LOC111651878	Calreticulin. (425 aa)
	LOC111650504	Uncharacterized protein. (180 aa)
	ENSSLDP00000005816	Calreticulin. (397 aa)
	LOC111646461	Uncharacterized protein; Belongs to the histidine acid phosphatase family. (212 aa)
	LOC111663547	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family. (413 aa)
	txndc5	Thioredoxin domain containing 5; Belongs to the protein disulfide isomerase family. (411 aa)
	ENSSLDP00000009416	annotation not available (83 aa)
	LOC111661728	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle. (437 aa)
	LOC111648319	Uncharacterized protein. (184 aa)
	sil1	SIL1 nucleotide exchange factor. (295 aa)
	ENSSLDP00000010406	Uncharacterized protein. (158 aa)
	alg12	Mannosyltransferase. (494 aa)
	hspa5	Heat shock protein 5; Belongs to the heat shock protein 70 family. (654 aa)
	p4ha2	Procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide 2. (556 aa)
	pdia4	Protein disulfide-isomerase A4; Belongs to the protein disulfide isomerase family. (633 aa)
	ENSSLDP00000011988	Uncharacterized protein. (173 aa)
	LOC111665451	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family. (405 aa)
	hsp90b1	Heat shock protein 90, beta (grp94), member 1. (797 aa)
	LOC111669159	Calreticulin. (421 aa)
	mettl26	Methyltransferase like 26. (206 aa)
	p4ha3	Prolyl 4-hydroxylase, alpha polypeptide III. (542 aa)
	ENSSLDP00000013239	Uncharacterized protein. (122 aa)
	tor4a	Torsin family 4, member Aa. (447 aa)
	ENSSLDP00000014068	6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. (255 aa)
	manf	Mesencephalic astrocyte-derived neurotrophic factor. (180 aa)
	ENSSLDP00000014848	Uncharacterized protein. (189 aa)
	pdia5	Protein disulfide isomerase family A, member 5. (528 aa)
	LOC111666076	Cerebral endothelial cell adhesion molecule. (590 aa)
	LOC111653462	Uncharacterized protein. (216 aa)
	LOC111655112	Multiple inositol-polyphosphate phosphatase 1. (322 aa)
	LOC111671697	Calreticulin. (412 aa)
	LOC111663708	DnaJ heat shock protein family (Hsp40) member B9b. (236 aa)
	hyou1	Hypoxia up-regulated 1. (981 aa)
	eogt	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase. (515 aa)
	erp44	Endoplasmic reticulum protein 44. (410 aa)
	uggt1	UDP-glucose glycoprotein glucosyltransferase 1. (1530 aa)
	SRL	Sarcalumenin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (456 aa)
	LOC111651499	DnaJ heat shock protein family (Hsp40) member B9a. (214 aa)
	colgalt1	Uncharacterized protein. (609 aa)
	LOC111666756	Torsin family 1. (301 aa)
	LOC111666758	Torsin. (335 aa)
	LOC111666755	Torsin. (331 aa)
	SUMF2	Sulfatase modifying factor 2. (299 aa)
	LOC111661288	Si:ch211-13f8.2. (618 aa)
	selenof	Selenoprotein F. (152 aa)
	p4ha1	Prolyl 4-hydroxylase, alpha polypeptide I b. (548 aa)
	LOC111664374	Fe2OG dioxygenase domain-containing protein. (453 aa)
	LOC111670434	Uncharacterized protein. (314 aa)
	LOC111658209	Selenoprotein M. (145 aa)
	FKBP10	Peptidylprolyl isomerase. (562 aa)
	LOC111656305	Collagen beta(1-O)galactosyltransferase 2. (615 aa)
	LOC111656341	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (876 aa)
	dnajc10	DnaJ (Hsp40) homolog, subfamily C, member 10. (851 aa)
	LOC111657110	Peptidylprolyl isomerase. (567 aa)
	LOC111653332	Calumenin b. (315 aa)
	dnajb11	DnaJ heat shock protein family (Hsp40) member B11. (360 aa)
	LOC111662199	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle. (429 aa)
	erlec1	Endoplasmic reticulum lectin 1. (484 aa)
	JMJD8	Jumonji domain containing 8. (266 aa)
	LOC111647774	Reticulocalbin 3, EF-hand calcium binding domain. (317 aa)
	poglut2	Protein O-glucosyltransferase 2. (505 aa)
	srl	Sarcalumenin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (482 aa)
	LOC111652997	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (849 aa)
	txndc12	Thioredoxin domain containing 12 (endoplasmic reticulum). (173 aa)
	LOC111663267	Zgc:136472. (496 aa)
	ENSSLDP00000030184	Thioredoxin domain-containing protein. (207 aa)
	ENSSLDP00000030193	Protein disulfide isomerase family A, member 2; Belongs to the protein disulfide isomerase family. (315 aa)
	TMEM43	Uncharacterized protein. (432 aa)
	erp27	Uncharacterized protein. (263 aa)
	foxred2	FAD-dependent oxidoreductase domain containing 2. (687 aa)
	tor2a	Torsin family 2, member A. (311 aa)
	rcn2	Reticulocalbin 2. (271 aa)
	os9	OS9 endoplasmic reticulum lectin. (677 aa)
	LOC111670083	Multiple inositol-polyphosphate phosphatase 1a; Belongs to the histidine acid phosphatase family. (457 aa)
	LOC111670039	Multiple inositol-polyphosphate phosphatase 1a; Belongs to the histidine acid phosphatase family. (257 aa)
	LOC111670130	CLN6 transmembrane ER protein a. (304 aa)
	rcn1	Reticulocalbin 1, EF-hand calcium binding domain. (320 aa)
	LOC111645945	Ribonuclease T2; Belongs to the RNase T2 family. (234 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSLDP00000000682	ENSSLDP00000014068	ENSSLDP00000000682	ENSSLDP00000014068	6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.	6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.	0.989
ENSSLDP00000000682	h6pd	ENSSLDP00000000682	ENSSLDP00000001620	6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.	Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).	0.989
ENSSLDP00000001524	ENSSLDP00000003181	ENSSLDP00000001524	ENSSLDP00000003181	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.505
ENSSLDP00000001524	ENSSLDP00000003422	ENSSLDP00000001524	ENSSLDP00000003422	Uncharacterized protein; Belongs to the heat shock protein 70 family.	J domain-containing protein.	0.695
ENSSLDP00000001524	ENSSLDP00000003866	ENSSLDP00000001524	ENSSLDP00000003866	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Thioredoxin domain containing 16.	0.574
ENSSLDP00000001524	ENSSLDP00000005816	ENSSLDP00000001524	ENSSLDP00000005816	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Calreticulin.	0.822
ENSSLDP00000001524	ENSSLDP00000009416	ENSSLDP00000001524	ENSSLDP00000009416	Uncharacterized protein; Belongs to the heat shock protein 70 family.	annotation not available	0.505
ENSSLDP00000001524	ENSSLDP00000010406	ENSSLDP00000001524	ENSSLDP00000010406	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.898
ENSSLDP00000001524	ENSSLDP00000011988	ENSSLDP00000001524	ENSSLDP00000011988	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.915
ENSSLDP00000001524	ENSSLDP00000030184	ENSSLDP00000001524	ENSSLDP00000030184	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Thioredoxin domain-containing protein.	0.837
ENSSLDP00000001524	ENSSLDP00000030193	ENSSLDP00000001524	ENSSLDP00000030193	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Protein disulfide isomerase family A, member 2; Belongs to the protein disulfide isomerase family.	0.837
ENSSLDP00000001524	LOC111647198	ENSSLDP00000001524	ENSSLDP00000003887	Uncharacterized protein; Belongs to the heat shock protein 70 family.	DnaJ (Hsp40) homolog, subfamily C, member 3b.	0.738
ENSSLDP00000001524	LOC111651499	ENSSLDP00000001524	ENSSLDP00000018754	Uncharacterized protein; Belongs to the heat shock protein 70 family.	DnaJ heat shock protein family (Hsp40) member B9a.	0.856
ENSSLDP00000001524	LOC111651878	ENSSLDP00000001524	ENSSLDP00000005675	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Calreticulin.	0.822
ENSSLDP00000001524	LOC111659072	ENSSLDP00000001524	ENSSLDP00000000844	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Protein disulfide-isomerase.	0.834
ENSSLDP00000001524	LOC111663267	ENSSLDP00000001524	ENSSLDP00000030168	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Zgc:136472.	0.834
ENSSLDP00000001524	LOC111663708	ENSSLDP00000001524	ENSSLDP00000015752	Uncharacterized protein; Belongs to the heat shock protein 70 family.	DnaJ heat shock protein family (Hsp40) member B9b.	0.860
ENSSLDP00000001524	LOC111669159	ENSSLDP00000001524	ENSSLDP00000012590	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Calreticulin.	0.822
ENSSLDP00000001524	LOC111671697	ENSSLDP00000001524	ENSSLDP00000015730	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Calreticulin.	0.822
ENSSLDP00000001524	dnajb11	ENSSLDP00000001524	ENSSLDP00000025429	Uncharacterized protein; Belongs to the heat shock protein 70 family.	DnaJ heat shock protein family (Hsp40) member B11.	0.966