STRINGSTRING
nfil3 nfil3 mnat1 mnat1 Pcf11 Pcf11 LOC111644199 LOC111644199 LOC111666869 LOC111666869 LOC111656677 LOC111656677 ENSSLDP00000001450 ENSSLDP00000001450 wdr61 wdr61 LOC111670156 LOC111670156 polr2g polr2g LOC111644705 LOC111644705 ENSSLDP00000002535 ENSSLDP00000002535 ENSSLDP00000002558 ENSSLDP00000002558 paf1 paf1 tcea2 tcea2 polr2h polr2h cdk12 cdk12 ENSSLDP00000003054 ENSSLDP00000003054 taf12 taf12 ENSSLDP00000003326 ENSSLDP00000003326 LOC111667587 LOC111667587 LOC111663406 LOC111663406 ehf ehf taf9 taf9 ablim3 ablim3 LOC111654870 LOC111654870 med18 med18 ENSSLDP00000003774 ENSSLDP00000003774 LOC111659175 LOC111659175 polr2c polr2c LOC111664669 LOC111664669 LOC111665364 LOC111665364 gtf2a1 gtf2a1 ENSSLDP00000005176 ENSSLDP00000005176 snapc1 snapc1 LOC111656197 LOC111656197 taf8 taf8 nfatc2 nfatc2 POLR2E POLR2E rpap1 rpap1 LOC111672141 LOC111672141 LOC111645412 LOC111645412 ENSSLDP00000008130 ENSSLDP00000008130 ENSSLDP00000008454 ENSSLDP00000008454 LOC111650607 LOC111650607 prdm4 prdm4 gcm2 gcm2 nfatc4 nfatc4 supt5h supt5h taf11 taf11 supt16h supt16h LOC111666682 LOC111666682 LOC111666659 LOC111666659 ENSSLDP00000010710 ENSSLDP00000010710 gtf2f1 gtf2f1 ercc3 ercc3 gtf2f2 gtf2f2 polr2i polr2i LOC111655032 LOC111655032 scaf1 scaf1 ENSSLDP00000012247 ENSSLDP00000012247 LOC111646106 LOC111646106 LOC111651353 LOC111651353 LOC111650018 LOC111650018 rtf1 rtf1 tmem240 tmem240 LOC111647896 LOC111647896 leo1 leo1 taf3 taf3 ENSSLDP00000014037 ENSSLDP00000014037 taf4 taf4 SMAD4 SMAD4 LOC111649246 LOC111649246 eny2 eny2 LOC111670993 LOC111670993 lhx1 lhx1 ENSSLDP00000015085 ENSSLDP00000015085 zbtb1 zbtb1 LOC111671004 LOC111671004 LOC111669183 LOC111669183 phrf1 phrf1 taf6l taf6l LOC111656202 LOC111656202 LOC111655108 LOC111655108 LOC111661872 LOC111661872 ENSSLDP00000017093 ENSSLDP00000017093 atxn1l atxn1l plac8 plac8 ENSSLDP00000017456 ENSSLDP00000017456 polr2k polr2k LOC111657636 LOC111657636 ENSSLDP00000018323 ENSSLDP00000018323 LOC111657575 LOC111657575 LOC111647417 LOC111647417 LOC111659874 LOC111659874 supt6h supt6h ENSSLDP00000018995 ENSSLDP00000018995 pcid2 pcid2 xbp1 xbp1 etv1 etv1 gtf2a2 gtf2a2 tcea1 tcea1 ENSSLDP00000020317 ENSSLDP00000020317 taf13 taf13 setd2 setd2 LOC111658180 LOC111658180 gtf2b gtf2b tcea3 tcea3 ENSSLDP00000021197 ENSSLDP00000021197 ELOF1 ELOF1 LOC111653959 LOC111653959 LOC111662500 LOC111662500 ENSSLDP00000021498 ENSSLDP00000021498 polr2b polr2b LOC111672326 LOC111672326 ENSSLDP00000021689 ENSSLDP00000021689 rb1 rb1 LOC111665615 LOC111665615 LOC111650957 LOC111650957 LOC111665022 LOC111665022 drap1 drap1 ENSSLDP00000022220 ENSSLDP00000022220 ccnh ccnh supt3h supt3h LOC111660587 LOC111660587 ell2 ell2 LOC111652268 LOC111652268 ENSSLDP00000023118 ENSSLDP00000023118 ENSSLDP00000023146 ENSSLDP00000023146 gtf2h3 gtf2h3 ell ell ENSSLDP00000023671 ENSSLDP00000023671 ENSSLDP00000023887 ENSSLDP00000023887 ar ar LOC111647585 LOC111647585 Eloa Eloa msx1 msx1 CYTL1 CYTL1 nkx2-3 nkx2-3 med1 med1 gsx1 gsx1 cdc73 cdc73 dr1 dr1 gtf2h5 gtf2h5 LOC111668561 LOC111668561 ercc2 ercc2 cdk13 cdk13 polr2a polr2a taf6 taf6 taf7 taf7 LOC111658356 LOC111658356 rbmx rbmx gtf2a1l gtf2a1l LOC111671085 LOC111671085 NKX2-8 NKX2-8 ctr9 ctr9 LOC111644645 LOC111644645 gtf2e1 gtf2e1 abra abra polr2j polr2j LOC111652387 LOC111652387 taf2 taf2 gtf2h1 gtf2h1 nr1h4 nr1h4 LOC111649705 LOC111649705 tbpl1 tbpl1 fndc10 fndc10 ssu72 ssu72 snapc3 snapc3 snapc5 snapc5 LOC111669911 LOC111669911 polr2l polr2l LOC111671211 LOC111671211 tbp tbp ENSSLDP00000031383 ENSSLDP00000031383 Srf Srf taf10 taf10 LOC111646413 LOC111646413 hltf hltf polr2d polr2d gtf2e2 gtf2e2 LOC111667059 LOC111667059 polr2f polr2f LOC111645724 LOC111645724 GATA2 GATA2 ccdc124 ccdc124 ddx21 ddx21
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
nfil3Nuclear factor, interleukin 3 regulated. (452 aa)
mnat1MNAT1 component of CDK activating kinase. (236 aa)
Pcf11CID domain-containing protein. (107 aa)
LOC111644199Adhesion regulating molecule 1. (411 aa)
LOC111666869Si:ch211-13k12.2. (599 aa)
LOC111656677Elongin A, like. (580 aa)
ENSSLDP00000001450NR LBD domain-containing protein. (115 aa)
wdr61WD repeat domain 61. (305 aa)
LOC111670156Uncharacterized protein. (622 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (172 aa)
LOC111644705Mothers against decapentaplegic homolog. (550 aa)
ENSSLDP00000002535Uncharacterized protein. (78 aa)
ENSSLDP00000002558Protein kinase domain-containing protein. (298 aa)
paf1PAF1 homolog, Paf1/RNA polymerase II complex component. (525 aa)
tcea2Transcription elongation factor A (SII), 2. (302 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
cdk12Cyclin-dependent kinase 12. (1360 aa)
ENSSLDP00000003054SAP domain-containing protein. (832 aa)
taf12TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (153 aa)
ENSSLDP00000003326GTF2I repeat domain containing 1. (715 aa)
LOC111667587Thioredoxin_11 domain-containing protein. (479 aa)
LOC111663406Uncharacterized protein. (376 aa)
ehfEts homologous factor. (275 aa)
taf9TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (247 aa)
ablim3Actin binding LIM protein family, member 3. (674 aa)
LOC111654870Occludin; May play a role in the formation and regulation of the tight junction (TJ) paracellular permeability barrier. Belongs to the ELL/occludin family. (546 aa)
med18Mediator of RNA polymerase II transcription subunit 18; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (209 aa)
ENSSLDP00000003774NR LBD domain-containing protein. (103 aa)
LOC111659175Uncharacterized protein. (610 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
LOC111664669NK2 homeobox 5. (327 aa)
LOC111665364ETS domain-containing protein. (501 aa)
gtf2a1General transcription factor IIA, 1. (351 aa)
ENSSLDP00000005176AIG1-type G domain-containing protein. (416 aa)
snapc1Small nuclear RNA activating complex, polypeptide 1b. (353 aa)
LOC111656197Uncharacterized protein. (203 aa)
taf8TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (308 aa)
nfatc2Nuclear factor of activated T cells 2a. (884 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
rpap1RNA polymerase II associated protein 1. (1424 aa)
LOC111672141Actin binding LIM protein family member 3. (642 aa)
LOC111645412Actin binding Rho activating protein a. (358 aa)
ENSSLDP00000008130WD_REPEATS_REGION domain-containing protein. (160 aa)
ENSSLDP00000008454PH_TFIIH domain-containing protein. (61 aa)
LOC111650607Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (96 aa)
prdm4PR domain containing 4. (794 aa)
gcm2Glial cells missing transcription factor 2. (470 aa)
nfatc4Nuclear factor of activated T cells 4. (850 aa)
supt5hTranscription elongation factor SPT5. (1084 aa)
taf11TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (205 aa)
supt16hSPT16 homolog, facilitates chromatin remodeling subunit. (1031 aa)
LOC111666682Nuclear factor, interleukin 3 regulated, member 5. (621 aa)
LOC111666659BZIP domain-containing protein. (421 aa)
ENSSLDP00000010710Thioredoxin_11 domain-containing protein. (439 aa)
gtf2f1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (516 aa)
ercc3Excision repair cross-complementation group 3. (803 aa)
gtf2f2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (270 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
LOC111655032Endothelin 1. (187 aa)
scaf1SR-related CTD-associated factor 1. (1402 aa)
ENSSLDP00000012247Ubiquitin-like domain-containing protein. (101 aa)
LOC111646106E1A binding protein p300 a. (2843 aa)
LOC111651353MADS-box domain-containing protein. (435 aa)
LOC111650018Nuclear receptor subfamily 1, group H, member 5. (492 aa)
rtf1RTF1 homolog, Paf1/RNA polymerase II complex component. (677 aa)
tmem240Transmembrane protein 240a. (175 aa)
LOC111647896General transcription factor IIH subunit. (392 aa)
leo1LEO1 homolog, Paf1/RNA polymerase II complex component. (636 aa)
taf3TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (935 aa)
ENSSLDP00000014037Uncharacterized protein. (302 aa)
taf4TATA-box binding protein associated factor 4. (996 aa)
SMAD4Mothers against decapentaplegic homolog. (503 aa)
LOC111649246GATA binding protein 1a. (425 aa)
eny2Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (124 aa)
LOC111670993TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor. (881 aa)
lhx1LIM homeobox 1a. (407 aa)
ENSSLDP00000015085TAF4 domain-containing protein. (274 aa)
zbtb1Zinc finger and BTB domain containing 1. (686 aa)
LOC111671004GATA binding protein 2a. (462 aa)
LOC111669183Mothers against decapentaplegic homolog. (585 aa)
phrf1PHD and ring finger domains 1. (1667 aa)
taf6lTAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (627 aa)
LOC111656202Homeobox domain-containing protein. (357 aa)
LOC111655108B30.2/SPRY domain-containing protein. (705 aa)
LOC111661872CCAAT enhancer binding protein beta. (297 aa)
ENSSLDP00000017093Thioredoxin_11 domain-containing protein. (514 aa)
atxn1lAtaxin 1-like. (850 aa)
plac8Placenta associated 8, tandem duplicate 1. (104 aa)
ENSSLDP00000017456Uncharacterized protein. (105 aa)
polr2kPolymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
LOC111657636Ash1 (absent, small, or homeotic)-like (Drosophila). (2962 aa)
ENSSLDP00000018323Si:dkey-29b11.3. (76 aa)
LOC111657575Protein S100; Belongs to the S-100 family. (100 aa)
LOC111647417Si:dkey-219c3.2. (900 aa)
LOC111659874CBFD_NFYB_HMF domain-containing protein. (150 aa)
supt6hTranscription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1649 aa)
ENSSLDP00000018995PHD-type domain-containing protein. (720 aa)
pcid2PCI domain containing 2. (391 aa)
xbp1X-box binding protein 1. (297 aa)
etv1Ets variant 1. (438 aa)
gtf2a2Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (111 aa)
tcea1Transcription elongation factor A (SII), 1. (310 aa)
ENSSLDP00000020317General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (427 aa)
taf13TATA-box binding protein associated factor 13. (124 aa)
setd2SET domain containing 2, histone lysine methyltransferase. (2677 aa)
LOC111658180Muscle segment homeobox 3. (255 aa)
gtf2bGeneral transcription factor IIB. (318 aa)
tcea3Transcription elongation factor A (SII), 3. (369 aa)
ENSSLDP00000021197Thioredoxin_11 domain-containing protein. (599 aa)
ELOF1Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (83 aa)
LOC111653959Transcription initiation factor TFIID subunit. (1990 aa)
LOC111662500Nuclear factor, interleukin 3 regulated, member 6. (413 aa)
ENSSLDP00000021498BZIP domain-containing protein. (572 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
LOC111672326TAFH domain-containing protein. (942 aa)
ENSSLDP00000021689Uncharacterized protein. (167 aa)
rb1Retinoblastoma 1. (914 aa)
LOC111665615Sequestosome 1. (431 aa)
LOC111650957Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (83 aa)
LOC111665022Uncharacterized protein. (1041 aa)
drap1DR1-associated protein 1 (negative cofactor 2 alpha). (233 aa)
ENSSLDP00000022220Uncharacterized protein. (205 aa)
ccnhCyclin H; Belongs to the cyclin family. (319 aa)
supt3hSPT3 homolog, SAGA and STAGA complex component. (339 aa)
LOC111660587Elongin B. (119 aa)
ell2Elongation factor, RNA polymerase II, 2. (626 aa)
LOC111652268Ubiquitin-like domain-containing protein. (120 aa)
ENSSLDP00000023118Septin-type G domain-containing protein. (244 aa)
ENSSLDP00000023146CID domain-containing protein. (72 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (278 aa)
ellElongation factor RNA polymerase II. (564 aa)
ENSSLDP00000023671PRY domain-containing protein. (484 aa)
ENSSLDP00000023887Nuclear factor, interleukin 3 regulated, member 4. (251 aa)
arAndrogen receptor. (800 aa)
LOC111647585E1A binding protein p300 b. (2679 aa)
EloaElongin A. (219 aa)
msx1Muscle segment homeobox 1a. (320 aa)
CYTL1Cytokine like 1. (146 aa)
nkx2-3NK2 homeobox 3. (340 aa)
med1Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1836 aa)
gsx1GS homeobox 1. (321 aa)
cdc73Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (530 aa)
dr1Down-regulator of transcription 1. (176 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (91 aa)
LOC111668561E74-like factor 3 (ets domain transcription factor, epithelial-specific ). (386 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
cdk13Cyclin-dependent kinase 13. (1419 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1966 aa)
taf6TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (638 aa)
taf7TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (421 aa)
LOC111658356Nuclear factor of activated T cells 5b. (1295 aa)
rbmxRNA binding motif protein X-linked. (393 aa)
gtf2a1lGeneral transcription factor IIA, 1-like. (373 aa)
LOC111671085Occludin; May play a role in the formation and regulation of the tight junction (TJ) paracellular permeability barrier. Belongs to the ELL/occludin family. (543 aa)
NKX2-8NK2 homeobox 8. (226 aa)
ctr9CTR9 homolog, Paf1/RNA polymerase II complex component. (1163 aa)
LOC111644645Uncharacterized protein. (361 aa)
gtf2e1General transcription factor IIE, polypeptide 1, alpha. (444 aa)
abraActin binding Rho activating protein b. (423 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
LOC111652387General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (255 aa)
taf2TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (1213 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
nr1h4Nuclear receptor subfamily 1, group H, member 4. (485 aa)
LOC111649705AT rich interactive domain 4A (RBP1-like). (1011 aa)
tbpl1TBP-like 1. (187 aa)
fndc10Fibronectin type III domain containing 10. (356 aa)
ssu72SSU72 homolog, RNA polymerase II CTD phosphatase. (194 aa)
snapc3Small nuclear RNA activating complex, polypeptide 3. (382 aa)
snapc5Small nuclear RNA activating complex, polypeptide 5. (119 aa)
LOC111669911Tumor necrosis factor receptor superfamily, member 1a. (392 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
LOC111671211Nuclear factor of activated T cells 5a. (1485 aa)
tbpTATA box binding protein. (253 aa)
ENSSLDP00000031383Uncharacterized protein. (88 aa)
SrfSerum response factor b. (427 aa)
taf10Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (186 aa)
LOC111646413Uncharacterized protein. (674 aa)
hltfHelicase-like transcription factor. (970 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (145 aa)
gtf2e2Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (284 aa)
LOC111667059Interactor of little elongator complex ELL subunit 2. (944 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
LOC111645724Mothers against decapentaplegic homolog. (510 aa)
GATA2GATA binding protein 2. (459 aa)
ccdc124Coiled-coil domain containing 124. (221 aa)
ddx21DEAD (Asp-Glu-Ala-Asp) box helicase 21. (636 aa)
Your Current Organism:
Seriola lalandi
NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis
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