43 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111655108	B30.2/SPRY domain-containing protein. (705 aa)
	LOC111644199	Adhesion regulating molecule 1. (411 aa)
	LOC111666869	Si:ch211-13k12.2. (599 aa)
	LOC111656677	Elongin A, like. (580 aa)
	wdr61	WD repeat domain 61. (305 aa)
	LOC111670156	Uncharacterized protein. (622 aa)
	ENSSLDP00000002558	Protein kinase domain-containing protein. (298 aa)
	paf1	PAF1 homolog, Paf1/RNA polymerase II complex component. (525 aa)
	tcea2	Transcription elongation factor A (SII), 2. (302 aa)
	cdk12	Cyclin-dependent kinase 12. (1360 aa)
	LOC111667587	Thioredoxin_11 domain-containing protein. (479 aa)
	LOC111659175	Uncharacterized protein. (610 aa)
	ENSSLDP00000005176	AIG1-type G domain-containing protein. (416 aa)
	ENSSLDP00000008130	WD_REPEATS_REGION domain-containing protein. (160 aa)
	LOC111650607	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (96 aa)
	supt5h	Transcription elongation factor SPT5. (1084 aa)
	supt16h	SPT16 homolog, facilitates chromatin remodeling subunit. (1031 aa)
	ENSSLDP00000010710	Thioredoxin_11 domain-containing protein. (439 aa)
	gtf2f1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (516 aa)
	polr2i	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	ENSSLDP00000012247	Ubiquitin-like domain-containing protein. (101 aa)
	rtf1	RTF1 homolog, Paf1/RNA polymerase II complex component. (677 aa)
	leo1	LEO1 homolog, Paf1/RNA polymerase II complex component. (636 aa)
	eny2	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (124 aa)
	ENSSLDP00000017093	Thioredoxin_11 domain-containing protein. (514 aa)
	supt6h	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1649 aa)
	pcid2	PCI domain containing 2. (391 aa)
	tcea1	Transcription elongation factor A (SII), 1. (310 aa)
	setd2	SET domain containing 2, histone lysine methyltransferase. (2677 aa)
	tcea3	Transcription elongation factor A (SII), 3. (369 aa)
	ENSSLDP00000021197	Thioredoxin_11 domain-containing protein. (599 aa)
	ELOF1	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (83 aa)
	LOC111650957	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (83 aa)
	LOC111660587	Elongin B. (119 aa)
	ell2	Elongation factor, RNA polymerase II, 2. (626 aa)
	LOC111652268	Ubiquitin-like domain-containing protein. (120 aa)
	ENSSLDP00000023118	Septin-type G domain-containing protein. (244 aa)
	ell	Elongation factor RNA polymerase II. (564 aa)
	ENSSLDP00000023671	PRY domain-containing protein. (484 aa)
	Eloa	Elongin A. (219 aa)
	cdc73	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (530 aa)
	cdk13	Cyclin-dependent kinase 13. (1419 aa)
	ctr9	CTR9 homolog, Paf1/RNA polymerase II complex component. (1163 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELOF1	cdc73	ENSSLDP00000021358	ENSSLDP00000025483	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.800
ELOF1	ctr9	ENSSLDP00000021358	ENSSLDP00000028219	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.592
ELOF1	leo1	ENSSLDP00000021358	ENSSLDP00000013575	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.838
ELOF1	paf1	ENSSLDP00000021358	ENSSLDP00000002704	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.548
ELOF1	polr2i	ENSSLDP00000021358	ENSSLDP00000011738	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.590
ELOF1	rtf1	ENSSLDP00000021358	ENSSLDP00000012777	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	RTF1 homolog, Paf1/RNA polymerase II complex component.	0.643
ELOF1	supt16h	ENSSLDP00000021358	ENSSLDP00000010420	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	SPT16 homolog, facilitates chromatin remodeling subunit.	0.765
ELOF1	supt5h	ENSSLDP00000021358	ENSSLDP00000010265	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Transcription elongation factor SPT5.	0.925
ELOF1	supt6h	ENSSLDP00000021358	ENSSLDP00000018932	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.700
ENSSLDP00000002558	Eloa	ENSSLDP00000002558	ENSSLDP00000024390	Protein kinase domain-containing protein.	Elongin A.	0.539
ENSSLDP00000002558	LOC111656677	ENSSLDP00000002558	ENSSLDP00000001328	Protein kinase domain-containing protein.	Elongin A, like.	0.539
ENSSLDP00000002558	LOC111659175	ENSSLDP00000002558	ENSSLDP00000003873	Protein kinase domain-containing protein.	Uncharacterized protein.	0.410
ENSSLDP00000002558	LOC111666869	ENSSLDP00000002558	ENSSLDP00000001147	Protein kinase domain-containing protein.	Si:ch211-13k12.2.	0.410
ENSSLDP00000002558	LOC111670156	ENSSLDP00000002558	ENSSLDP00000002060	Protein kinase domain-containing protein.	Uncharacterized protein.	0.410
ENSSLDP00000002558	cdc73	ENSSLDP00000002558	ENSSLDP00000025483	Protein kinase domain-containing protein.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.613
ENSSLDP00000002558	ctr9	ENSSLDP00000002558	ENSSLDP00000028219	Protein kinase domain-containing protein.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.457
ENSSLDP00000002558	ell	ENSSLDP00000002558	ENSSLDP00000023482	Protein kinase domain-containing protein.	Elongation factor RNA polymerase II.	0.410
ENSSLDP00000002558	ell2	ENSSLDP00000002558	ENSSLDP00000023050	Protein kinase domain-containing protein.	Elongation factor, RNA polymerase II, 2.	0.410
ENSSLDP00000002558	leo1	ENSSLDP00000002558	ENSSLDP00000013575	Protein kinase domain-containing protein.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.651
ENSSLDP00000002558	polr2i	ENSSLDP00000002558	ENSSLDP00000011738	Protein kinase domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.646