44 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ythdc1	YTH domain containing 1. (686 aa)
	thoc5	THO complex 5. (684 aa)
	IWS1	Interacts with SUPT6H, CTD assembly factor 1. (557 aa)
	LOC111659763	Uncharacterized protein. (346 aa)
	sarnp	SAP domain containing ribonucleoprotein. (211 aa)
	LOC111660396	RRM domain-containing protein. (262 aa)
	tpr	Translocated promoter region b, nuclear basket protein. (2223 aa)
	LOC111647459	Uncharacterized protein. (415 aa)
	LOC111650607	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (96 aa)
	NUP214	Nucleoporin 214. (2000 aa)
	LOC111667741	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast). (488 aa)
	LOC111652212	Q_MOTIF domain-containing protein. (133 aa)
	nup155	Nucleoporin 155. (1348 aa)
	eny2	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (124 aa)
	rae1	Ribonucleic acid export 1. (368 aa)
	nup160	Nucleoporin 160. (1190 aa)
	chtop	Chromatin target of PRMT1a. (246 aa)
	Thoc6	THO complex 6. (304 aa)
	thoc7	THO complex 7. (203 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (789 aa)
	pcid2	PCI domain containing 2. (391 aa)
	thoc1	THO complex 1. (654 aa)
	LOC111645609	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B. (432 aa)
	thoc2	THO complex 2. (1564 aa)
	nxf1	Zgc:153681. (561 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (907 aa)
	LOC111669362	Zgc:193690. (487 aa)
	DDX39A	DExD-box helicase 39A. (427 aa)
	ENSSLDP00000022787	Uncharacterized protein. (97 aa)
	alyref	Aly/REF export factor. (273 aa)
	mcm3ap	Minichromosome maintenance complex component 3 associated protein. (1905 aa)
	Zc3h11a	Uncharacterized protein. (247 aa)
	thoc3	THO complex 3. (322 aa)
	fyttd1	Uncharacterized protein. (318 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (795 aa)
	LOC111653432	Translocated promoter region a, nuclear basket protein. (2017 aa)
	alkbh5	AlkB homolog 5, RNA demethylase. (347 aa)
	SRSF3	Serine and arginine rich splicing factor 3b. (165 aa)
	polr2d	Polymerase (RNA) II (DNA directed) polypeptide D. (145 aa)
	LOC111660751	RRM domain-containing protein. (168 aa)
	poldip3	Polymerase (DNA-directed), delta interacting protein 3. (491 aa)
	gle1	GLE1 RNA export mediator. (721 aa)
	ENSSLDP00000033451	SEM1 26S proteasome complex subunit. (70 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (614 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX39A	LOC111650607	ENSSLDP00000022619	ENSSLDP00000009088	DExD-box helicase 39A.	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	0.434
DDX39A	LOC111660396	ENSSLDP00000022619	ENSSLDP00000006761	DExD-box helicase 39A.	RRM domain-containing protein.	0.888
DDX39A	LOC111660751	ENSSLDP00000022619	ENSSLDP00000032182	DExD-box helicase 39A.	RRM domain-containing protein.	0.601
DDX39A	NCBP1	ENSSLDP00000022619	ENSSLDP00000028369	DExD-box helicase 39A.	Nuclear cap binding protein subunit 1.	0.747
DDX39A	NUP214	ENSSLDP00000022619	ENSSLDP00000009941	DExD-box helicase 39A.	Nucleoporin 214.	0.535
DDX39A	SRSF3	ENSSLDP00000022619	ENSSLDP00000029316	DExD-box helicase 39A.	Serine and arginine rich splicing factor 3b.	0.601
DDX39A	Thoc6	ENSSLDP00000022619	ENSSLDP00000017308	DExD-box helicase 39A.	THO complex 6.	0.831
DDX39A	Zc3h11a	ENSSLDP00000022619	ENSSLDP00000023254	DExD-box helicase 39A.	Uncharacterized protein.	0.566
DDX39A	alyref	ENSSLDP00000022619	ENSSLDP00000022811	DExD-box helicase 39A.	Aly/REF export factor.	0.912
DDX39A	chtop	ENSSLDP00000022619	ENSSLDP00000015856	DExD-box helicase 39A.	Chromatin target of PRMT1a.	0.771
DDX39A	eny2	ENSSLDP00000022619	ENSSLDP00000014560	DExD-box helicase 39A.	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	0.434
DDX39A	fyttd1	ENSSLDP00000022619	ENSSLDP00000027510	DExD-box helicase 39A.	Uncharacterized protein.	0.638
DDX39A	gle1	ENSSLDP00000022619	ENSSLDP00000032289	DExD-box helicase 39A.	GLE1 RNA export mediator.	0.581
DDX39A	mcm3ap	ENSSLDP00000022619	ENSSLDP00000022935	DExD-box helicase 39A.	Minichromosome maintenance complex component 3 associated protein.	0.576
DDX39A	nup107	ENSSLDP00000022619	ENSSLDP00000021504	DExD-box helicase 39A.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.419
DDX39A	nup155	ENSSLDP00000022619	ENSSLDP00000013982	DExD-box helicase 39A.	Nucleoporin 155.	0.407
DDX39A	nxf1	ENSSLDP00000022619	ENSSLDP00000020559	DExD-box helicase 39A.	Zgc:153681.	0.681
DDX39A	pcid2	ENSSLDP00000022619	ENSSLDP00000019012	DExD-box helicase 39A.	PCI domain containing 2.	0.422
DDX39A	poldip3	ENSSLDP00000022619	ENSSLDP00000032237	DExD-box helicase 39A.	Polymerase (DNA-directed), delta interacting protein 3.	0.839
DDX39A	rae1	ENSSLDP00000022619	ENSSLDP00000014724	DExD-box helicase 39A.	Ribonucleic acid export 1.	0.684