29 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	aadat	Aminoadipate aminotransferase. (425 aa)
	gclc	Glutamate-cysteine ligase, catalytic subunit. (630 aa)
	gclm	Glutamate-cysteine ligase, modifier subunit. (261 aa)
	tat	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. (479 aa)
	amdhd1	Amidohydrolase domain containing 1. (432 aa)
	adhfe1	Alcohol dehydrogenase iron containing 1. (466 aa)
	prodh2	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate. (459 aa)
	hal	Histidine ammonia-lyase; Belongs to the PAL/histidase family. (654 aa)
	LOC111655096	Glutaminase 2b (liver, mitochondrial). (598 aa)
	LOC111664813	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate. (622 aa)
	nags	N-acetylglutamate synthase. (555 aa)
	GOT1	Aspartate aminotransferase. (410 aa)
	LOC111667432	EF-hand_14 domain-containing protein. (572 aa)
	ftcd	Formimidoyltransferase cyclodeaminase. (512 aa)
	fpgs	Folylpolyglutamate synthase; Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis; Belongs to the folylpolyglutamate synthase family. (578 aa)
	LOC111663083	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate. (661 aa)
	got2	Aspartate aminotransferase. (428 aa)
	got1	Aspartate aminotransferase. (410 aa)
	LOC111657077	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family. (782 aa)
	LOC111672443	Glutaminase a. (634 aa)
	gad2	Glutamate decarboxylase 2. (514 aa)
	LOC111657157	Zgc:153901. (329 aa)
	aldh4a1	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. (556 aa)
	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family. (779 aa)
	oat	Ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (444 aa)
	LOC111669307	Par3_HAL_N_term domain-containing protein. (158 aa)
	LOC111644964	Glutamic-oxaloacetic transaminase 1 like 1. (420 aa)
	aldh5a1	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (490 aa)
	LOC111655005	Glutaminase 2a (liver, mitochondrial). (609 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALDH18A1	GOT1	ENSSLDP00000031092	ENSSLDP00000016094	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Aspartate aminotransferase.	0.491
ALDH18A1	LOC111644964	ENSSLDP00000031092	ENSSLDP00000011421	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Glutamic-oxaloacetic transaminase 1 like 1.	0.491
ALDH18A1	LOC111655005	ENSSLDP00000031092	ENSSLDP00000011739	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Glutaminase 2a (liver, mitochondrial).	0.953
ALDH18A1	LOC111655096	ENSSLDP00000031092	ENSSLDP00000014451	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Glutaminase 2b (liver, mitochondrial).	0.953
ALDH18A1	LOC111657077	ENSSLDP00000031092	ENSSLDP00000025200	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	0.999
ALDH18A1	LOC111663083	ENSSLDP00000031092	ENSSLDP00000023049	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.	0.720
ALDH18A1	LOC111664813	ENSSLDP00000031092	ENSSLDP00000015558	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.	0.720
ALDH18A1	LOC111667432	ENSSLDP00000031092	ENSSLDP00000019343	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	EF-hand_14 domain-containing protein.	0.953
ALDH18A1	LOC111669307	ENSSLDP00000031092	ENSSLDP00000010726	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Par3_HAL_N_term domain-containing protein.	0.411
ALDH18A1	LOC111672443	ENSSLDP00000031092	ENSSLDP00000026635	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Glutaminase a.	0.953
ALDH18A1	adhfe1	ENSSLDP00000031092	ENSSLDP00000006826	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Alcohol dehydrogenase iron containing 1.	0.525
ALDH18A1	aldh4a1	ENSSLDP00000031092	ENSSLDP00000028420	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.978
ALDH18A1	aldh5a1	ENSSLDP00000031092	ENSSLDP00000011432	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.795
ALDH18A1	fpgs	ENSSLDP00000031092	ENSSLDP00000022486	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Folylpolyglutamate synthase; Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis; Belongs to the folylpolyglutamate synthase family.	0.740
ALDH18A1	gad2	ENSSLDP00000031092	ENSSLDP00000027117	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Glutamate decarboxylase 2.	0.858
ALDH18A1	gclc	ENSSLDP00000031092	ENSSLDP00000001452	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Glutamate-cysteine ligase, catalytic subunit.	0.590
ALDH18A1	got1	ENSSLDP00000031092	ENSSLDP00000024766	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Aspartate aminotransferase.	0.491
ALDH18A1	got2	ENSSLDP00000031092	ENSSLDP00000023880	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Aspartate aminotransferase.	0.585
ALDH18A1	hal	ENSSLDP00000031092	ENSSLDP00000013278	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Histidine ammonia-lyase; Belongs to the PAL/histidase family.	0.411
ALDH18A1	nags	ENSSLDP00000031092	ENSSLDP00000015607	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	N-acetylglutamate synthase.	0.791