40 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rnf32	Ring finger protein 32. (363 aa)
	prdm16	Si:ch211-263k4.2. (1187 aa)
	rangap1	RAN GTPase activating protein 1a. (560 aa)
	RAD18	RAD18 E3 ubiquitin protein ligase. (501 aa)
	keap1	Kelch-like ECH-associated protein 1b. (625 aa)
	LOC111662719	RAN binding protein 2. (2916 aa)
	LOC111653432	Translocated promoter region a, nuclear basket protein. (2017 aa)
	prkn	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (449 aa)
	LOC111670163	Kelch-like ECH-associated protein 1a. (601 aa)
	wdfy3	WD repeat and FYVE domain containing 3. (3478 aa)
	card14	Caspase recruitment domain family, member 14. (984 aa)
	edem1	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (638 aa)
	sncb	Beta-synuclein; Belongs to the synuclein family. (117 aa)
	tpr	Translocated promoter region b, nuclear basket protein. (2223 aa)
	pold1	DNA polymerase. (1105 aa)
	zbtb14	Zinc finger and BTB domain containing 14. (437 aa)
	ENSSLDP00000010396	Uncharacterized protein. (107 aa)
	ENSSLDP00000011352	Uncharacterized protein. (472 aa)
	lrrk2	Leucine-rich repeat kinase 2. (2341 aa)
	LOC111646130	Ran GTPase activating protein 1b. (544 aa)
	agl	Uncharacterized protein. (1524 aa)
	ENSSLDP00000014091	RanBD1 domain-containing protein. (113 aa)
	ENSSLDP00000015022	GSAP-16 domain-containing protein. (157 aa)
	klhl14	Kelch-like family member 14. (605 aa)
	LOC111672195	AXH domain-containing protein. (684 aa)
	nup153	Nucleoporin 153. (1448 aa)
	hspb7	Heat shock protein family, member 7 (cardiovascular); Belongs to the small heat shock protein (HSP20) family. (158 aa)
	nup98	Nucleoporin 98. (1775 aa)
	atxn1	Ataxin 1a. (821 aa)
	LOC111665497	Uncharacterized protein. (1520 aa)
	bag5	BCL2 associated athanogene 5. (486 aa)
	ENSSLDP00000018984	Tripartite motif containing 66. (774 aa)
	ENSSLDP00000019148	RING-type domain-containing protein. (94 aa)
	LOC111652778	Ataxin 1b. (833 aa)
	LOC111665615	Sequestosome 1. (431 aa)
	slf1	BRCT domain-containing protein. (563 aa)
	ENSSLDP00000024239	Uncharacterized protein. (348 aa)
	fbxo7	F-box protein 7. (446 aa)
	ENSSLDP00000026445	Uncharacterized protein. (45 aa)
	xrn2	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (889 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSLDP00000014091	LOC111646130	ENSSLDP00000014091	ENSSLDP00000012266	RanBD1 domain-containing protein.	Ran GTPase activating protein 1b.	0.997
ENSSLDP00000014091	LOC111653432	ENSSLDP00000014091	ENSSLDP00000028819	RanBD1 domain-containing protein.	Translocated promoter region a, nuclear basket protein.	0.975
ENSSLDP00000014091	LOC111662719	ENSSLDP00000014091	ENSSLDP00000030658	RanBD1 domain-containing protein.	RAN binding protein 2.	0.447
ENSSLDP00000014091	nup153	ENSSLDP00000014091	ENSSLDP00000016027	RanBD1 domain-containing protein.	Nucleoporin 153.	0.993
ENSSLDP00000014091	nup98	ENSSLDP00000014091	ENSSLDP00000016869	RanBD1 domain-containing protein.	Nucleoporin 98.	0.997
ENSSLDP00000014091	prkn	ENSSLDP00000014091	ENSSLDP00000001635	RanBD1 domain-containing protein.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.423
ENSSLDP00000014091	rangap1	ENSSLDP00000014091	ENSSLDP00000024023	RanBD1 domain-containing protein.	RAN GTPase activating protein 1a.	0.997
ENSSLDP00000014091	slf1	ENSSLDP00000014091	ENSSLDP00000023623	RanBD1 domain-containing protein.	BRCT domain-containing protein.	0.530
ENSSLDP00000014091	tpr	ENSSLDP00000014091	ENSSLDP00000006803	RanBD1 domain-containing protein.	Translocated promoter region b, nuclear basket protein.	0.975
ENSSLDP00000015022	LOC111670163	ENSSLDP00000015022	ENSSLDP00000001927	GSAP-16 domain-containing protein.	Kelch-like ECH-associated protein 1a.	0.737
ENSSLDP00000015022	keap1	ENSSLDP00000015022	ENSSLDP00000030672	GSAP-16 domain-containing protein.	Kelch-like ECH-associated protein 1b.	0.737
ENSSLDP00000015022	prkn	ENSSLDP00000015022	ENSSLDP00000001635	GSAP-16 domain-containing protein.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.897
ENSSLDP00000015022	wdfy3	ENSSLDP00000015022	ENSSLDP00000002133	GSAP-16 domain-containing protein.	WD repeat and FYVE domain containing 3.	0.510
ENSSLDP00000026445	pold1	ENSSLDP00000026445	ENSSLDP00000008400	Uncharacterized protein.	DNA polymerase.	0.835
ENSSLDP00000026445	slf1	ENSSLDP00000026445	ENSSLDP00000023623	Uncharacterized protein.	BRCT domain-containing protein.	0.732
LOC111646130	ENSSLDP00000014091	ENSSLDP00000012266	ENSSLDP00000014091	Ran GTPase activating protein 1b.	RanBD1 domain-containing protein.	0.997
LOC111646130	LOC111653432	ENSSLDP00000012266	ENSSLDP00000028819	Ran GTPase activating protein 1b.	Translocated promoter region a, nuclear basket protein.	0.562
LOC111646130	LOC111662719	ENSSLDP00000012266	ENSSLDP00000030658	Ran GTPase activating protein 1b.	RAN binding protein 2.	0.997
LOC111646130	nup153	ENSSLDP00000012266	ENSSLDP00000016027	Ran GTPase activating protein 1b.	Nucleoporin 153.	0.814
LOC111646130	nup98	ENSSLDP00000012266	ENSSLDP00000016869	Ran GTPase activating protein 1b.	Nucleoporin 98.	0.788