34 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111644546	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (843 aa)
	bbs1	Bardet-Biedl syndrome 1. (581 aa)
	dicer1	Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily. (1825 aa)
	slc7a11	Solute carrier family 7 member 11. (483 aa)
	numb	NUMB endocytic adaptor protein. (574 aa)
	prkci	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (564 aa)
	arnt2	Aryl-hydrocarbon receptor nuclear translocator 2. (732 aa)
	dpcd	Deleted in primary ciliary dyskinesia homolog (mouse). (218 aa)
	rpgrip1l	RPGRIP1 like. (975 aa)
	LOC111651813	TPR_REGION domain-containing protein. (298 aa)
	mecp2	Methyl CpG binding protein 2. (1023 aa)
	wnt1	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (370 aa)
	nme5	NME/NM23 family member 5; Belongs to the NDK family. (211 aa)
	med12	Mediator complex subunit 12. (2122 aa)
	armc4	Armadillo repeat containing 4. (932 aa)
	LOC111654240	NUMB like endocytic adaptor protein. (750 aa)
	BBS4	Bardet-Biedl syndrome 4. (369 aa)
	mnat1	MNAT1 component of CDK activating kinase. (236 aa)
	ENSSLDP00000019800	Aquaporin 1a (Colton blood group), tandem duplicate 2; Belongs to the MIP/aquaporin (TC 1.A.8) family. (221 aa)
	LOC111653245	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (268 aa)
	rfng	Beta-1,3-N-acetylglucosaminyltransferase. (406 aa)
	ttc21b	Tetratricopeptide repeat domain 21B. (1317 aa)
	uchl5	Ubiquitin carboxyl-terminal hydrolase. (329 aa)
	LOC111660043	Si:ch73-352p4.8. (417 aa)
	LOC111660045	Si:ch73-352p4.8. (479 aa)
	CDH2	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins. (848 aa)
	cenpf	Centromere protein F. (2810 aa)
	mpp5	Membrane protein, palmitoylated 5b (MAGUK p55 subfamily member 5); Belongs to the MAGUK family. (631 aa)
	ccdc134	Si:dkey-167k11.5. (218 aa)
	LOC111652194	Aryl hydrocarbon receptor nuclear translocator. (736 aa)
	rapgef2	Rap guanine nucleotide exchange factor (GEF) 2. (1627 aa)
	LOC111653237	Aquaporin 1a (Colton blood group), tandem duplicate 1; Belongs to the MIP/aquaporin (TC 1.A.8) family. (280 aa)
	MPP5	Membrane protein, palmitoylated 5a (MAGUK p55 subfamily member 5); Belongs to the MAGUK family. (630 aa)
	hydin	HYDIN axonemal central pair apparatus protein. (4406 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BBS4	bbs1	ENSSLDP00000000620	ENSSLDP00000015833	Bardet-Biedl syndrome 4.	Bardet-Biedl syndrome 1.	0.974
BBS4	rpgrip1l	ENSSLDP00000000620	ENSSLDP00000012889	Bardet-Biedl syndrome 4.	RPGRIP1 like.	0.408
BBS4	ttc21b	ENSSLDP00000000620	ENSSLDP00000020331	Bardet-Biedl syndrome 4.	Tetratricopeptide repeat domain 21B.	0.450
CDH2	LOC111644546	ENSSLDP00000024218	ENSSLDP00000020684	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.901
LOC111644546	CDH2	ENSSLDP00000020684	ENSSLDP00000024218	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	0.901
LOC111651813	bbs1	ENSSLDP00000012664	ENSSLDP00000015833	TPR_REGION domain-containing protein.	Bardet-Biedl syndrome 1.	0.974
LOC111651813	rpgrip1l	ENSSLDP00000012664	ENSSLDP00000012889	TPR_REGION domain-containing protein.	RPGRIP1 like.	0.408
LOC111651813	ttc21b	ENSSLDP00000012664	ENSSLDP00000020331	TPR_REGION domain-containing protein.	Tetratricopeptide repeat domain 21B.	0.450
LOC111654240	prkci	ENSSLDP00000000923	ENSSLDP00000014201	NUMB like endocytic adaptor protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.720
MPP5	prkci	ENSSLDP00000017134	ENSSLDP00000014201	Membrane protein, palmitoylated 5a (MAGUK p55 subfamily member 5); Belongs to the MAGUK family.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.464
bbs1	BBS4	ENSSLDP00000015833	ENSSLDP00000000620	Bardet-Biedl syndrome 1.	Bardet-Biedl syndrome 4.	0.974
bbs1	LOC111651813	ENSSLDP00000015833	ENSSLDP00000012664	Bardet-Biedl syndrome 1.	TPR_REGION domain-containing protein.	0.974
bbs1	rpgrip1l	ENSSLDP00000015833	ENSSLDP00000012889	Bardet-Biedl syndrome 1.	RPGRIP1 like.	0.599
bbs1	ttc21b	ENSSLDP00000015833	ENSSLDP00000020331	Bardet-Biedl syndrome 1.	Tetratricopeptide repeat domain 21B.	0.502
dicer1	nme5	ENSSLDP00000015253	ENSSLDP00000006448	Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.	NME/NM23 family member 5; Belongs to the NDK family.	0.441
med12	uchl5	ENSSLDP00000005431	ENSSLDP00000022830	Mediator complex subunit 12.	Ubiquitin carboxyl-terminal hydrolase.	0.617
mpp5	prkci	ENSSLDP00000031948	ENSSLDP00000014201	Membrane protein, palmitoylated 5b (MAGUK p55 subfamily member 5); Belongs to the MAGUK family.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.464
nme5	dicer1	ENSSLDP00000006448	ENSSLDP00000015253	NME/NM23 family member 5; Belongs to the NDK family.	Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.	0.441
numb	prkci	ENSSLDP00000014259	ENSSLDP00000014201	NUMB endocytic adaptor protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.720
prkci	LOC111654240	ENSSLDP00000014201	ENSSLDP00000000923	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	NUMB like endocytic adaptor protein.	0.720