13 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSLDP00000020610	Mesoderm posterior ba. (237 aa)
	LOC111669183	Mothers against decapentaplegic homolog. (585 aa)
	SMAD4	Mothers against decapentaplegic homolog. (503 aa)
	tmed2	Transmembrane p24 trafficking protein 2. (207 aa)
	ENSSLDP00000011652	Forkhead box H1. (468 aa)
	LOC111644705	Mothers against decapentaplegic homolog. (550 aa)
	ENSSLDP00000002089	Ripply transcriptional repressor 2. (152 aa)
	LOC111645724	Mothers against decapentaplegic homolog. (510 aa)
	kdm6a	Lysine (K)-specific demethylase 6A. (1382 aa)
	LOC111650973	RAP1A, member of RAS oncogene family b. (185 aa)
	LOC111661323	Uncharacterized protein. (184 aa)
	LOC111646207	Lysine (K)-specific demethylase 6A, like. (1515 aa)
	LOC111661945	Uncharacterized protein. (185 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSLDP00000011652	LOC111644705	ENSSLDP00000011652	ENSSLDP00000002431	Forkhead box H1.	Mothers against decapentaplegic homolog.	0.652
ENSSLDP00000011652	LOC111645724	ENSSLDP00000011652	ENSSLDP00000032438	Forkhead box H1.	Mothers against decapentaplegic homolog.	0.652
ENSSLDP00000011652	LOC111669183	ENSSLDP00000011652	ENSSLDP00000015809	Forkhead box H1.	Mothers against decapentaplegic homolog.	0.652
ENSSLDP00000011652	SMAD4	ENSSLDP00000011652	ENSSLDP00000014268	Forkhead box H1.	Mothers against decapentaplegic homolog.	0.652
LOC111644705	ENSSLDP00000011652	ENSSLDP00000002431	ENSSLDP00000011652	Mothers against decapentaplegic homolog.	Forkhead box H1.	0.652
LOC111645724	ENSSLDP00000011652	ENSSLDP00000032438	ENSSLDP00000011652	Mothers against decapentaplegic homolog.	Forkhead box H1.	0.652
LOC111650973	LOC111661323	ENSSLDP00000021876	ENSSLDP00000021781	RAP1A, member of RAS oncogene family b.	Uncharacterized protein.	0.900
LOC111650973	LOC111661945	ENSSLDP00000021876	ENSSLDP00000016623	RAP1A, member of RAS oncogene family b.	Uncharacterized protein.	0.900
LOC111661323	LOC111650973	ENSSLDP00000021781	ENSSLDP00000021876	Uncharacterized protein.	RAP1A, member of RAS oncogene family b.	0.900
LOC111661323	LOC111661945	ENSSLDP00000021781	ENSSLDP00000016623	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC111661945	LOC111650973	ENSSLDP00000016623	ENSSLDP00000021876	Uncharacterized protein.	RAP1A, member of RAS oncogene family b.	0.900
LOC111661945	LOC111661323	ENSSLDP00000016623	ENSSLDP00000021781	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC111669183	ENSSLDP00000011652	ENSSLDP00000015809	ENSSLDP00000011652	Mothers against decapentaplegic homolog.	Forkhead box H1.	0.652
SMAD4	ENSSLDP00000011652	ENSSLDP00000014268	ENSSLDP00000011652	Mothers against decapentaplegic homolog.	Forkhead box H1.	0.652