27 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	supt16h	SPT16 homolog, facilitates chromatin remodeling subunit. (1031 aa)
	Pwwp2a	PWWP domain containing 2A. (643 aa)
	pwwp2b	PWWP domain containing 2B. (623 aa)
	LOC111667384	Cyclin T2; Belongs to the cyclin family. (712 aa)
	LOC111671085	Occludin; May play a role in the formation and regulation of the tight junction (TJ) paracellular permeability barrier. Belongs to the ELL/occludin family. (543 aa)
	cdk13	Cyclin-dependent kinase 13. (1419 aa)
	cdc73	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (530 aa)
	LOC111647569	Chromobox homolog 7a. (391 aa)
	ell	Elongation factor RNA polymerase II. (564 aa)
	ell2	Elongation factor, RNA polymerase II, 2. (626 aa)
	supt6h	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1649 aa)
	ENSSLDP00000015455	BRD4_CDT domain-containing protein. (218 aa)
	ENSSLDP00000015432	Bromo domain-containing protein. (159 aa)
	leo1	LEO1 homolog, Paf1/RNA polymerase II complex component. (636 aa)
	LOC111646103	Chromobox homolog 7b. (145 aa)
	gtf2f1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (516 aa)
	supt5h	Transcription elongation factor SPT5. (1084 aa)
	eapp	E2f-associated phosphoprotein. (288 aa)
	LOC111646012	Cyclin T2b; Belongs to the cyclin family. (553 aa)
	ccnt1	Cyclin T1; Belongs to the cyclin family. (696 aa)
	LOC111659175	Uncharacterized protein. (610 aa)
	LOC111654870	Occludin; May play a role in the formation and regulation of the tight junction (TJ) paracellular permeability barrier. Belongs to the ELL/occludin family. (546 aa)
	cdk12	Cyclin-dependent kinase 12. (1360 aa)
	ENSSLDP00000002558	Protein kinase domain-containing protein. (298 aa)
	LOC111653655	Bromodomain containing 4. (1562 aa)
	LOC111670156	Uncharacterized protein. (622 aa)
	LOC111666869	Si:ch211-13k12.2. (599 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSLDP00000002558	LOC111646012	ENSSLDP00000002558	ENSSLDP00000006068	Protein kinase domain-containing protein.	Cyclin T2b; Belongs to the cyclin family.	0.815
ENSSLDP00000002558	LOC111659175	ENSSLDP00000002558	ENSSLDP00000003873	Protein kinase domain-containing protein.	Uncharacterized protein.	0.410
ENSSLDP00000002558	LOC111666869	ENSSLDP00000002558	ENSSLDP00000001147	Protein kinase domain-containing protein.	Si:ch211-13k12.2.	0.410
ENSSLDP00000002558	LOC111667384	ENSSLDP00000002558	ENSSLDP00000027854	Protein kinase domain-containing protein.	Cyclin T2; Belongs to the cyclin family.	0.815
ENSSLDP00000002558	LOC111670156	ENSSLDP00000002558	ENSSLDP00000002060	Protein kinase domain-containing protein.	Uncharacterized protein.	0.410
ENSSLDP00000002558	ccnt1	ENSSLDP00000002558	ENSSLDP00000004711	Protein kinase domain-containing protein.	Cyclin T1; Belongs to the cyclin family.	0.815
ENSSLDP00000002558	cdc73	ENSSLDP00000002558	ENSSLDP00000025483	Protein kinase domain-containing protein.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.613
ENSSLDP00000002558	ell	ENSSLDP00000002558	ENSSLDP00000023482	Protein kinase domain-containing protein.	Elongation factor RNA polymerase II.	0.410
ENSSLDP00000002558	ell2	ENSSLDP00000002558	ENSSLDP00000023050	Protein kinase domain-containing protein.	Elongation factor, RNA polymerase II, 2.	0.410
ENSSLDP00000002558	leo1	ENSSLDP00000002558	ENSSLDP00000013575	Protein kinase domain-containing protein.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.651
ENSSLDP00000002558	supt16h	ENSSLDP00000002558	ENSSLDP00000010420	Protein kinase domain-containing protein.	SPT16 homolog, facilitates chromatin remodeling subunit.	0.727
ENSSLDP00000002558	supt5h	ENSSLDP00000002558	ENSSLDP00000010265	Protein kinase domain-containing protein.	Transcription elongation factor SPT5.	0.921
ENSSLDP00000002558	supt6h	ENSSLDP00000002558	ENSSLDP00000018932	Protein kinase domain-containing protein.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.533
ENSSLDP00000015432	ENSSLDP00000015455	ENSSLDP00000015432	ENSSLDP00000015455	Bromo domain-containing protein.	BRD4_CDT domain-containing protein.	0.599
ENSSLDP00000015432	ccnt1	ENSSLDP00000015432	ENSSLDP00000004711	Bromo domain-containing protein.	Cyclin T1; Belongs to the cyclin family.	0.458
ENSSLDP00000015455	ENSSLDP00000015432	ENSSLDP00000015455	ENSSLDP00000015432	BRD4_CDT domain-containing protein.	Bromo domain-containing protein.	0.599
ENSSLDP00000015455	ccnt1	ENSSLDP00000015455	ENSSLDP00000004711	BRD4_CDT domain-containing protein.	Cyclin T1; Belongs to the cyclin family.	0.458
LOC111646012	ENSSLDP00000002558	ENSSLDP00000006068	ENSSLDP00000002558	Cyclin T2b; Belongs to the cyclin family.	Protein kinase domain-containing protein.	0.815
LOC111646012	LOC111659175	ENSSLDP00000006068	ENSSLDP00000003873	Cyclin T2b; Belongs to the cyclin family.	Uncharacterized protein.	0.629
LOC111646012	LOC111666869	ENSSLDP00000006068	ENSSLDP00000001147	Cyclin T2b; Belongs to the cyclin family.	Si:ch211-13k12.2.	0.629