(24 nodes) Apoptotic cell clearance network (Seriola lalandi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	megf10	Multiple EGF-like-domains 10. (1120 aa)
	LOC111651575	Rho related BTB domain containing 4. (734 aa)
	scarb1	Scavenger receptor class B, member 1; Belongs to the CD36 family. (491 aa)
	LOC111658974	C-mer proto-oncogene tyrosine kinase a. (932 aa)
	LOC111666916	Multiple EGF-like-domains 11. (933 aa)
	LOC111655681	Platelet endothelial aggregation receptor 1. (1022 aa)
	rhobtb2	Rho related BTB domain containing 2a. (721 aa)
	xkr6	XK-related protein. (580 aa)
	gas6	Growth arrest-specific 6. (616 aa)
	LOC111661464	XK-related protein. (647 aa)
	LOC111644257	XK-related protein. (575 aa)
	AXL	AXL receptor tyrosine kinase. (943 aa)
	xkr9	XK-related protein. (386 aa)
	spg11	SPG11 vesicle trafficking associated, spatacsin. (1936 aa)
	xkr4	XK-related protein. (616 aa)
	ENSSLDP00000011488	Ras homolog gene family, member Gd. (117 aa)
	MEGF11	Multiple EGF like domains 11. (1008 aa)
	LOC111655029	XK-related protein. (403 aa)
	ENSSLDP00000012227	XK-related protein. (418 aa)
	LOC111645996	XK-related protein. (567 aa)
	ENSSLDP00000014565	Uncharacterized protein. (127 aa)
	LOC111649300	Ras homolog family member Gb. (180 aa)
	LOC111661860	XK-related protein. (592 aa)
	tyrobp	Uncharacterized protein. (102 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AXL	gas6	ENSSLDP00000005843	ENSSLDP00000002009	AXL receptor tyrosine kinase.	Growth arrest-specific 6.	0.755
ENSSLDP00000011488	LOC111649300	ENSSLDP00000011488	ENSSLDP00000016282	Ras homolog gene family, member Gd.	Ras homolog family member Gb.	0.903
LOC111649300	ENSSLDP00000011488	ENSSLDP00000016282	ENSSLDP00000011488	Ras homolog family member Gb.	Ras homolog gene family, member Gd.	0.903
LOC111651575	rhobtb2	ENSSLDP00000021976	ENSSLDP00000000221	Rho related BTB domain containing 4.	Rho related BTB domain containing 2a.	0.901
LOC111658974	gas6	ENSSLDP00000028278	ENSSLDP00000002009	C-mer proto-oncogene tyrosine kinase a.	Growth arrest-specific 6.	0.755
gas6	AXL	ENSSLDP00000002009	ENSSLDP00000005843	Growth arrest-specific 6.	AXL receptor tyrosine kinase.	0.755
gas6	LOC111658974	ENSSLDP00000002009	ENSSLDP00000028278	Growth arrest-specific 6.	C-mer proto-oncogene tyrosine kinase a.	0.755
rhobtb2	LOC111651575	ENSSLDP00000000221	ENSSLDP00000021976	Rho related BTB domain containing 2a.	Rho related BTB domain containing 4.	0.901