(23 nodes) Camera-type eye photoreceptor cell differentiation network (Seriola lalandi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111670838	Mediator of RNA polymerase II transcription subunit 27-like. (140 aa)
	med27	Mediator complex subunit 27. (330 aa)
	Bhlhe23	Basic helix-loop-helix family, member e23. (222 aa)
	BBS4	Bardet-Biedl syndrome 4. (369 aa)
	LOC111650173	Retinal homeobox gene 1. (355 aa)
	ENSSLDP00000019870	RP1 axonemal microtubule associated. (237 aa)
	TBX2	T-box transcription factor 2. (687 aa)
	gdf6	Growth differentiation factor 6a. (452 aa)
	gdf5	Growth differentiation factor 5. (637 aa)
	rorb	RAR-related orphan receptor B. (472 aa)
	ush1c	Usher syndrome 1C. (827 aa)
	LOC111651813	TPR_REGION domain-containing protein. (298 aa)
	rpgrip1l	RPGRIP1 like. (975 aa)
	LOC111666436	RPGR interacting protein 1. (945 aa)
	LOC111656597	Uncharacterized protein. (2499 aa)
	LOC111666416	Uncharacterized protein. (167 aa)
	med24	Mediator complex subunit 24. (985 aa)
	ttc8	Tetratricopeptide repeat domain 8. (513 aa)
	LOC111660071	Thyroid hormone receptor beta. (512 aa)
	Eys	Uncharacterized protein. (268 aa)
	ENSSLDP00000024942	Uncharacterized protein. (366 aa)
	LOC111663832	T-box transcription factor 2a. (629 aa)
	naglu	N-acetylglucosaminidase, alpha. (751 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BBS4	rpgrip1l	ENSSLDP00000000620	ENSSLDP00000012889	Bardet-Biedl syndrome 4.	RPGRIP1 like.	0.408
BBS4	ttc8	ENSSLDP00000000620	ENSSLDP00000026888	Bardet-Biedl syndrome 4.	Tetratricopeptide repeat domain 8.	0.971
LOC111651813	rpgrip1l	ENSSLDP00000012664	ENSSLDP00000012889	TPR_REGION domain-containing protein.	RPGRIP1 like.	0.408
LOC111651813	ttc8	ENSSLDP00000012664	ENSSLDP00000026888	TPR_REGION domain-containing protein.	Tetratricopeptide repeat domain 8.	0.969
LOC111666416	LOC111666436	ENSSLDP00000030508	ENSSLDP00000030734	Uncharacterized protein.	RPGR interacting protein 1.	0.439
LOC111666436	LOC111666416	ENSSLDP00000030734	ENSSLDP00000030508	RPGR interacting protein 1.	Uncharacterized protein.	0.439
LOC111670838	med24	ENSSLDP00000012517	ENSSLDP00000027979	Mediator of RNA polymerase II transcription subunit 27-like.	Mediator complex subunit 24.	0.976
med24	LOC111670838	ENSSLDP00000027979	ENSSLDP00000012517	Mediator complex subunit 24.	Mediator of RNA polymerase II transcription subunit 27-like.	0.976
med24	med27	ENSSLDP00000027979	ENSSLDP00000009297	Mediator complex subunit 24.	Mediator complex subunit 27.	0.976
med27	med24	ENSSLDP00000009297	ENSSLDP00000027979	Mediator complex subunit 27.	Mediator complex subunit 24.	0.976
rpgrip1l	BBS4	ENSSLDP00000012889	ENSSLDP00000000620	RPGRIP1 like.	Bardet-Biedl syndrome 4.	0.408
rpgrip1l	LOC111651813	ENSSLDP00000012889	ENSSLDP00000012664	RPGRIP1 like.	TPR_REGION domain-containing protein.	0.408
ttc8	BBS4	ENSSLDP00000026888	ENSSLDP00000000620	Tetratricopeptide repeat domain 8.	Bardet-Biedl syndrome 4.	0.971
ttc8	LOC111651813	ENSSLDP00000026888	ENSSLDP00000012664	Tetratricopeptide repeat domain 8.	TPR_REGION domain-containing protein.	0.969