48 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cast	Uncharacterized protein. (177 aa)
	CST7	Cystatin F. (180 aa)
	LOC111664948	C-type lectin domain family 3, member Ba. (203 aa)
	ENSSLDP00000021111	Uncharacterized protein. (255 aa)
	plgrkt	Plasminogen receptor, C-terminal lysine transmembrane protein. (149 aa)
	LOC111666760	Growth arrest-specific 1b. (258 aa)
	prkaca	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily. (343 aa)
	ift52	Intraflagellar transport 52 homolog (Chlamydomonas). (446 aa)
	LOC111657575	Protein S100; Belongs to the S-100 family. (100 aa)
	hpn	Hepsin; Belongs to the peptidase S1 family. (427 aa)
	LOC111653850	SERPIN domain-containing protein; Belongs to the serpin family. (483 aa)
	cln3	Battenin. (442 aa)
	bcl2l12	Si:ch73-248e21.1. (344 aa)
	ENSSLDP00000012633	Uncharacterized protein. (77 aa)
	lrrk2	Leucine-rich repeat kinase 2. (2341 aa)
	ENSSLDP00000012141	annotation not available (45 aa)
	LOC111670008	Plasminogen receptor, C-terminal lysine transmembrane protein. (94 aa)
	LOC111657964	Rhomboid domain-containing protein. (304 aa)
	LOC111655575	Uncharacterized protein. (781 aa)
	ENSSLDP00000010006	Uncharacterized protein; Belongs to the protein kinase superfamily. (337 aa)
	glg1	Golgi glycoprotein 1a. (1102 aa)
	ENSSLDP00000009072	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (235 aa)
	serpine1	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1; Belongs to the serpin family. (392 aa)
	ENSSLDP00000007210	Uncharacterized protein. (145 aa)
	LOC111650527	Interleukin 1 receptor type 2. (441 aa)
	ctsz	Cathepsin Z; Belongs to the peptidase C1 family. (306 aa)
	LOC111650447	Protein phosphatase 1, regulatory subunit 15B. (610 aa)
	LOC111653688	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily. (351 aa)
	rhbdd1	Rhomboid domain containing 1. (323 aa)
	ENSSLDP00000003423	Uncharacterized protein. (45 aa)
	LOC111658500	Uncharacterized protein; Belongs to the protein kinase superfamily. (351 aa)
	LOC111648927	SERPIN domain-containing protein; Belongs to the serpin family. (416 aa)
	bag2	BCL2 associated athanogene 2. (208 aa)
	LOC111672527	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family. (206 aa)
	serpine2	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2; Belongs to the serpin family. (393 aa)
	spon1	Spondin 1a. (806 aa)
	LDLRAD3	Low density lipoprotein receptor class A domain containing 3. (357 aa)
	LOC111651735	C-type lectin domain family 3, member Bb. (199 aa)
	lpcat3	Lysophosphatidylcholine acyltransferase 3; Belongs to the membrane-bound acyltransferase family. (464 aa)
	tmem98	Transmembrane protein 98. (224 aa)
	LOC111658373	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (300 aa)
	LOC111663225	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family. (208 aa)
	LOC111654722	Golgi glycoprotein 1b. (1145 aa)
	fgf2	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (155 aa)
	LOC111644680	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (303 aa)
	gas1	Growth arrest-specific 1a. (260 aa)
	rnf139	Ring finger protein 139. (702 aa)
	cntn2	Contactin 2. (1039 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSLDP00000021111	LOC111666760	ENSSLDP00000021111	ENSSLDP00000020265	Uncharacterized protein.	Growth arrest-specific 1b.	0.905
ENSSLDP00000021111	gas1	ENSSLDP00000021111	ENSSLDP00000026283	Uncharacterized protein.	Growth arrest-specific 1a.	0.905
LOC111653688	LOC111658500	ENSSLDP00000004665	ENSSLDP00000003336	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.900
LOC111653688	prkaca	ENSSLDP00000004665	ENSSLDP00000020068	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily.	0.900
LOC111654722	glg1	ENSSLDP00000027811	ENSSLDP00000009275	Golgi glycoprotein 1b.	Golgi glycoprotein 1a.	0.900
LOC111658500	LOC111653688	ENSSLDP00000003336	ENSSLDP00000004665	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	0.900
LOC111658500	prkaca	ENSSLDP00000003336	ENSSLDP00000020068	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily.	0.900
LOC111663225	LOC111672527	ENSSLDP00000028239	ENSSLDP00000000563	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	0.901
LOC111666760	ENSSLDP00000021111	ENSSLDP00000020265	ENSSLDP00000021111	Growth arrest-specific 1b.	Uncharacterized protein.	0.905
LOC111666760	gas1	ENSSLDP00000020265	ENSSLDP00000026283	Growth arrest-specific 1b.	Growth arrest-specific 1a.	0.902
LOC111672527	LOC111663225	ENSSLDP00000000563	ENSSLDP00000028239	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	0.901
gas1	ENSSLDP00000021111	ENSSLDP00000026283	ENSSLDP00000021111	Growth arrest-specific 1a.	Uncharacterized protein.	0.905
gas1	LOC111666760	ENSSLDP00000026283	ENSSLDP00000020265	Growth arrest-specific 1a.	Growth arrest-specific 1b.	0.902
glg1	LOC111654722	ENSSLDP00000009275	ENSSLDP00000027811	Golgi glycoprotein 1a.	Golgi glycoprotein 1b.	0.900
prkaca	LOC111653688	ENSSLDP00000020068	ENSSLDP00000004665	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	0.900
prkaca	LOC111658500	ENSSLDP00000020068	ENSSLDP00000003336	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.900
serpine1	serpine2	ENSSLDP00000007593	ENSSLDP00000033070	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1; Belongs to the serpin family.	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2; Belongs to the serpin family.	0.654
serpine2	serpine1	ENSSLDP00000033070	ENSSLDP00000007593	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2; Belongs to the serpin family.	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1; Belongs to the serpin family.	0.654