49 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	vegfa	Vascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family. (189 aa)
	sirt2	NAD-dependent protein deacetylase; NAD-dependent protein deacetylase. (383 aa)
	vhl	Von Hippel-Lindau tumor suppressor. (167 aa)
	hif1an	Hypoxia inducible factor 1 subunit alpha inhibitor. (354 aa)
	nop53	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (457 aa)
	bad	BCL2 associated agonist of cell death b. (167 aa)
	LOC111649729	Egl-9 family hypoxia-inducible factor 3. (242 aa)
	fam167a	Family with sequence similarity 167 member Ab. (209 aa)
	mpl	MPL proto-oncogene, thrombopoietin receptor. (633 aa)
	LOC111672600	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family. (168 aa)
	hif1a	Hypoxia inducible factor 1 subunit alpha a. (782 aa)
	EGLN3	Egl nine homolog 3-like. (85 aa)
	rbpj	Recombination signal binding protein for immunoglobulin kappa J region. (490 aa)
	ak4	GTP:AMP phosphotransferase AK3, mitochondrial; Involved in maintaining the homeostasis of cellular nucleotides by catalyzing the interconversion of nucleoside phosphates. Has GTP:AMP phosphotransferase and ITP:AMP phosphotransferase activities. (226 aa)
	mtor	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2494 aa)
	ptgs2	Prostaglandin-endoperoxide synthase 2b. (642 aa)
	ppard	Peroxisome proliferator-activated receptor delta b. (511 aa)
	fndc1	Fibronectin type III domain containing 1. (1889 aa)
	LOC111656778	Zgc:73226. (181 aa)
	ENSSLDP00000007854	Uncharacterized protein. (172 aa)
	LOC111657960	Hypoxia inducible factor 1 subunit alpha, like. (620 aa)
	BCL2	BCL2 apoptosis regulator. (212 aa)
	ENSSLDP00000011088	Uncharacterized protein. (150 aa)
	LOC111645458	Endothelial PAS domain protein 1b. (882 aa)
	hyou1	Hypoxia up-regulated 1. (981 aa)
	LOC111661929	DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1359 aa)
	ndnf	Neuron-derived neurotrophic factor. (571 aa)
	LOC111671714	Cytoplasmic polyadenylation element binding protein 2. (784 aa)
	fam162a	Family with sequence similarity 162 member A. (167 aa)
	LOC111653237	Aquaporin 1a (Colton blood group), tandem duplicate 1; Belongs to the MIP/aquaporin (TC 1.A.8) family. (280 aa)
	tbl2	Transducin (beta)-like 2. (441 aa)
	ado	2-aminoethanethiol (cysteamine) dioxygenase a. (264 aa)
	LOC111653245	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (268 aa)
	ENSSLDP00000019800	Aquaporin 1a (Colton blood group), tandem duplicate 2; Belongs to the MIP/aquaporin (TC 1.A.8) family. (221 aa)
	pink1	PTEN induced kinase 1. (575 aa)
	rgcc	Regulator of cell cycle. (123 aa)
	bnip3	BCL2 interacting protein 3. (191 aa)
	ENSSLDP00000022875	Fe2OG dioxygenase domain-containing protein. (101 aa)
	nfe2l2	Nuclear factor, erythroid 2-like 2a. (612 aa)
	bcl2	BCL2 apoptosis regulator b. (228 aa)
	sirt1	Sirtuin 1. (696 aa)
	stox1	Storkhead box 1. (1113 aa)
	LOC111663963	NK3 homeobox 1. (197 aa)
	ENSSLDP00000028517	Uncharacterized protein. (164 aa)
	LOC111655980	Egl-9 family hypoxia-inducible factor 2. (553 aa)
	cpeb1	Cytoplasmic polyadenylation element binding protein 1b. (540 aa)
	LOC111653567	2-aminoethanethiol (cysteamine) dioxygenase b. (260 aa)
	egln1	Egl-9 family hypoxia-inducible factor 1a. (359 aa)
	LOC111664574	Recombination signal binding protein for immunoglobulin kappa J region a. (496 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCL2	ENSSLDP00000028517	ENSSLDP00000008110	ENSSLDP00000028517	BCL2 apoptosis regulator.	Uncharacterized protein.	0.900
BCL2	LOC111656778	ENSSLDP00000008110	ENSSLDP00000006862	BCL2 apoptosis regulator.	Zgc:73226.	0.952
BCL2	bad	ENSSLDP00000008110	ENSSLDP00000000275	BCL2 apoptosis regulator.	BCL2 associated agonist of cell death b.	0.986
BCL2	bcl2	ENSSLDP00000008110	ENSSLDP00000025101	BCL2 apoptosis regulator.	BCL2 apoptosis regulator b.	0.900
BCL2	bnip3	ENSSLDP00000008110	ENSSLDP00000022282	BCL2 apoptosis regulator.	BCL2 interacting protein 3.	0.976
EGLN3	ENSSLDP00000011088	ENSSLDP00000003010	ENSSLDP00000011088	Egl nine homolog 3-like.	Uncharacterized protein.	0.444
EGLN3	LOC111645458	ENSSLDP00000003010	ENSSLDP00000013183	Egl nine homolog 3-like.	Endothelial PAS domain protein 1b.	0.760
EGLN3	LOC111657960	ENSSLDP00000003010	ENSSLDP00000007862	Egl nine homolog 3-like.	Hypoxia inducible factor 1 subunit alpha, like.	0.760
EGLN3	hif1a	ENSSLDP00000003010	ENSSLDP00000002294	Egl nine homolog 3-like.	Hypoxia inducible factor 1 subunit alpha a.	0.760
EGLN3	vhl	ENSSLDP00000003010	ENSSLDP00000032743	Egl nine homolog 3-like.	Von Hippel-Lindau tumor suppressor.	0.690
ENSSLDP00000007854	LOC111645458	ENSSLDP00000007854	ENSSLDP00000013183	Uncharacterized protein.	Endothelial PAS domain protein 1b.	0.760
ENSSLDP00000007854	LOC111657960	ENSSLDP00000007854	ENSSLDP00000007862	Uncharacterized protein.	Hypoxia inducible factor 1 subunit alpha, like.	0.760
ENSSLDP00000007854	hif1a	ENSSLDP00000007854	ENSSLDP00000002294	Uncharacterized protein.	Hypoxia inducible factor 1 subunit alpha a.	0.760
ENSSLDP00000007854	vhl	ENSSLDP00000007854	ENSSLDP00000032743	Uncharacterized protein.	Von Hippel-Lindau tumor suppressor.	0.690
ENSSLDP00000011088	EGLN3	ENSSLDP00000011088	ENSSLDP00000003010	Uncharacterized protein.	Egl nine homolog 3-like.	0.444
ENSSLDP00000011088	LOC111645458	ENSSLDP00000011088	ENSSLDP00000013183	Uncharacterized protein.	Endothelial PAS domain protein 1b.	0.760
ENSSLDP00000011088	LOC111657960	ENSSLDP00000011088	ENSSLDP00000007862	Uncharacterized protein.	Hypoxia inducible factor 1 subunit alpha, like.	0.760
ENSSLDP00000011088	hif1a	ENSSLDP00000011088	ENSSLDP00000002294	Uncharacterized protein.	Hypoxia inducible factor 1 subunit alpha a.	0.760
ENSSLDP00000011088	vhl	ENSSLDP00000011088	ENSSLDP00000032743	Uncharacterized protein.	Von Hippel-Lindau tumor suppressor.	0.690
ENSSLDP00000022875	LOC111645458	ENSSLDP00000022875	ENSSLDP00000013183	Fe2OG dioxygenase domain-containing protein.	Endothelial PAS domain protein 1b.	0.760