16 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pdcd5	Programmed cell death 5. (126 aa)
	bnip3	BCL2 interacting protein 3. (191 aa)
	pink1	PTEN induced kinase 1. (575 aa)
	ENSSLDP00000021156	Uncharacterized protein. (216 aa)
	LOC111665015	Neuromast-expressed gpi-anchored lymphocyte antigen 6. (194 aa)
	LOC111671691	UPAR/Ly6 domain-containing protein. (166 aa)
	ENSSLDP00000018864	UPAR/Ly6 domain-containing protein. (170 aa)
	LOC111669314	Zgc:153993. (204 aa)
	fam162a	Family with sequence similarity 162 member A. (167 aa)
	LOC111652668	Uncharacterized protein. (139 aa)
	pla2g6	Phospholipase A2, group VI (cytosolic, calcium-independent). (794 aa)
	bax	BCL2 associated X, apoptosis regulator a. (192 aa)
	mllt11	MLLT11 transcription factor 7 cofactor. (85 aa)
	LOC111656778	Zgc:73226. (181 aa)
	LOC111673262	Uncharacterized protein. (163 aa)
	bad	BCL2 associated agonist of cell death b. (167 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSLDP00000021156	LOC111652668	ENSSLDP00000021156	ENSSLDP00000016637	Uncharacterized protein.	Uncharacterized protein.	0.457
ENSSLDP00000021156	LOC111669314	ENSSLDP00000021156	ENSSLDP00000018275	Uncharacterized protein.	Zgc:153993.	0.940
ENSSLDP00000021156	LOC111673262	ENSSLDP00000021156	ENSSLDP00000005501	Uncharacterized protein.	Uncharacterized protein.	0.457
ENSSLDP00000021156	bad	ENSSLDP00000021156	ENSSLDP00000000275	Uncharacterized protein.	BCL2 associated agonist of cell death b.	0.757
ENSSLDP00000021156	bax	ENSSLDP00000021156	ENSSLDP00000011631	Uncharacterized protein.	BCL2 associated X, apoptosis regulator a.	0.933
LOC111652668	ENSSLDP00000021156	ENSSLDP00000016637	ENSSLDP00000021156	Uncharacterized protein.	Uncharacterized protein.	0.457
LOC111652668	LOC111669314	ENSSLDP00000016637	ENSSLDP00000018275	Uncharacterized protein.	Zgc:153993.	0.541
LOC111652668	bax	ENSSLDP00000016637	ENSSLDP00000011631	Uncharacterized protein.	BCL2 associated X, apoptosis regulator a.	0.436
LOC111656778	bnip3	ENSSLDP00000006862	ENSSLDP00000022282	Zgc:73226.	BCL2 interacting protein 3.	0.903
LOC111656778	pink1	ENSSLDP00000006862	ENSSLDP00000021731	Zgc:73226.	PTEN induced kinase 1.	0.491
LOC111669314	ENSSLDP00000021156	ENSSLDP00000018275	ENSSLDP00000021156	Zgc:153993.	Uncharacterized protein.	0.940
LOC111669314	LOC111652668	ENSSLDP00000018275	ENSSLDP00000016637	Zgc:153993.	Uncharacterized protein.	0.541
LOC111669314	LOC111673262	ENSSLDP00000018275	ENSSLDP00000005501	Zgc:153993.	Uncharacterized protein.	0.541
LOC111669314	bad	ENSSLDP00000018275	ENSSLDP00000000275	Zgc:153993.	BCL2 associated agonist of cell death b.	0.790
LOC111669314	bax	ENSSLDP00000018275	ENSSLDP00000011631	Zgc:153993.	BCL2 associated X, apoptosis regulator a.	0.991
LOC111673262	ENSSLDP00000021156	ENSSLDP00000005501	ENSSLDP00000021156	Uncharacterized protein.	Uncharacterized protein.	0.457
LOC111673262	LOC111669314	ENSSLDP00000005501	ENSSLDP00000018275	Uncharacterized protein.	Zgc:153993.	0.541
LOC111673262	bax	ENSSLDP00000005501	ENSSLDP00000011631	Uncharacterized protein.	BCL2 associated X, apoptosis regulator a.	0.436
bad	ENSSLDP00000021156	ENSSLDP00000000275	ENSSLDP00000021156	BCL2 associated agonist of cell death b.	Uncharacterized protein.	0.757
bad	LOC111669314	ENSSLDP00000000275	ENSSLDP00000018275	BCL2 associated agonist of cell death b.	Zgc:153993.	0.790