13 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	eif2ak1	Eukaryotic translation initiation factor 2-alpha kinase 1. (662 aa)
	LOC111671828	Activating transcription factor 4a. (464 aa)
	eif2s1	Eukaryotic translation initiation factor 2, subunit 1 alpha b. (315 aa)
	nfe2l2	Nuclear factor, erythroid 2-like 2a. (612 aa)
	LOC111646360	Activating transcription factor 4b. (457 aa)
	dele1	Uncharacterized protein. (475 aa)
	EIF2AK4	Eukaryotic translation initiation factor 2 alpha kinase 4. (1541 aa)
	LOC111649210	Uncharacterized protein. (121 aa)
	LOC111667813	RWD domain-containing protein. (113 aa)
	impact	Impact RWD domain protein. (317 aa)
	tmed2	Transmembrane p24 trafficking protein 2. (207 aa)
	eif2ak3	Eukaryotic translation initiation factor 2-alpha kinase 3. (1107 aa)
	oma1	OMA1 zinc metallopeptidase. (520 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF2AK4	LOC111671828	ENSSLDP00000005958	ENSSLDP00000027688	Eukaryotic translation initiation factor 2 alpha kinase 4.	Activating transcription factor 4a.	0.417
EIF2AK4	eif2ak3	ENSSLDP00000005958	ENSSLDP00000016690	Eukaryotic translation initiation factor 2 alpha kinase 4.	Eukaryotic translation initiation factor 2-alpha kinase 3.	0.490
EIF2AK4	eif2s1	ENSSLDP00000005958	ENSSLDP00000031996	Eukaryotic translation initiation factor 2 alpha kinase 4.	Eukaryotic translation initiation factor 2, subunit 1 alpha b.	0.922
EIF2AK4	impact	ENSSLDP00000005958	ENSSLDP00000011261	Eukaryotic translation initiation factor 2 alpha kinase 4.	Impact RWD domain protein.	0.434
LOC111646360	LOC111671828	ENSSLDP00000026214	ENSSLDP00000027688	Activating transcription factor 4b.	Activating transcription factor 4a.	0.905
LOC111646360	eif2ak3	ENSSLDP00000026214	ENSSLDP00000016690	Activating transcription factor 4b.	Eukaryotic translation initiation factor 2-alpha kinase 3.	0.947
LOC111646360	eif2s1	ENSSLDP00000026214	ENSSLDP00000031996	Activating transcription factor 4b.	Eukaryotic translation initiation factor 2, subunit 1 alpha b.	0.950
LOC111649210	eif2ak3	ENSSLDP00000006431	ENSSLDP00000016690	Uncharacterized protein.	Eukaryotic translation initiation factor 2-alpha kinase 3.	0.500
LOC111649210	eif2s1	ENSSLDP00000006431	ENSSLDP00000031996	Uncharacterized protein.	Eukaryotic translation initiation factor 2, subunit 1 alpha b.	0.521
LOC111667813	LOC111671828	ENSSLDP00000009501	ENSSLDP00000027688	RWD domain-containing protein.	Activating transcription factor 4a.	0.417
LOC111667813	eif2ak3	ENSSLDP00000009501	ENSSLDP00000016690	RWD domain-containing protein.	Eukaryotic translation initiation factor 2-alpha kinase 3.	0.490
LOC111667813	eif2s1	ENSSLDP00000009501	ENSSLDP00000031996	RWD domain-containing protein.	Eukaryotic translation initiation factor 2, subunit 1 alpha b.	0.922
LOC111667813	impact	ENSSLDP00000009501	ENSSLDP00000011261	RWD domain-containing protein.	Impact RWD domain protein.	0.434
LOC111671828	EIF2AK4	ENSSLDP00000027688	ENSSLDP00000005958	Activating transcription factor 4a.	Eukaryotic translation initiation factor 2 alpha kinase 4.	0.417
LOC111671828	LOC111646360	ENSSLDP00000027688	ENSSLDP00000026214	Activating transcription factor 4a.	Activating transcription factor 4b.	0.905
LOC111671828	LOC111667813	ENSSLDP00000027688	ENSSLDP00000009501	Activating transcription factor 4a.	RWD domain-containing protein.	0.417
LOC111671828	eif2ak1	ENSSLDP00000027688	ENSSLDP00000004803	Activating transcription factor 4a.	Eukaryotic translation initiation factor 2-alpha kinase 1.	0.407
LOC111671828	eif2ak3	ENSSLDP00000027688	ENSSLDP00000016690	Activating transcription factor 4a.	Eukaryotic translation initiation factor 2-alpha kinase 3.	0.962
LOC111671828	eif2s1	ENSSLDP00000027688	ENSSLDP00000031996	Activating transcription factor 4a.	Eukaryotic translation initiation factor 2, subunit 1 alpha b.	0.964
LOC111671828	nfe2l2	ENSSLDP00000027688	ENSSLDP00000024389	Activating transcription factor 4a.	Nuclear factor, erythroid 2-like 2a.	0.668