5 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111658500	Uncharacterized protein; Belongs to the protein kinase superfamily. (351 aa)
	LOC111653688	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily. (351 aa)
	ENSSLDP00000010006	Uncharacterized protein; Belongs to the protein kinase superfamily. (337 aa)
	prkaca	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily. (343 aa)
	gpr161	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family. (524 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSLDP00000010006	gpr161	ENSSLDP00000010006	ENSSLDP00000024356	Uncharacterized protein; Belongs to the protein kinase superfamily.	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	0.668
LOC111653688	LOC111658500	ENSSLDP00000004665	ENSSLDP00000003336	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.900
LOC111653688	gpr161	ENSSLDP00000004665	ENSSLDP00000024356	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	0.668
LOC111653688	prkaca	ENSSLDP00000004665	ENSSLDP00000020068	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily.	0.900
LOC111658500	LOC111653688	ENSSLDP00000003336	ENSSLDP00000004665	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	0.900
LOC111658500	gpr161	ENSSLDP00000003336	ENSSLDP00000024356	Uncharacterized protein; Belongs to the protein kinase superfamily.	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	0.668
LOC111658500	prkaca	ENSSLDP00000003336	ENSSLDP00000020068	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily.	0.900
gpr161	ENSSLDP00000010006	ENSSLDP00000024356	ENSSLDP00000010006	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.668
gpr161	LOC111653688	ENSSLDP00000024356	ENSSLDP00000004665	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	0.668
gpr161	LOC111658500	ENSSLDP00000024356	ENSSLDP00000003336	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.668
gpr161	prkaca	ENSSLDP00000024356	ENSSLDP00000020068	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily.	0.668
prkaca	LOC111653688	ENSSLDP00000020068	ENSSLDP00000004665	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	0.900
prkaca	LOC111658500	ENSSLDP00000020068	ENSSLDP00000003336	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.900
prkaca	gpr161	ENSSLDP00000020068	ENSSLDP00000024356	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily.	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	0.668