4 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111661323	Uncharacterized protein. (184 aa)
	LOC111650973	RAP1A, member of RAS oncogene family b. (185 aa)
	LOC111661945	Uncharacterized protein. (185 aa)
	fmr1	Fragile X mental retardation 1. (599 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111650973	LOC111661323	ENSSLDP00000021876	ENSSLDP00000021781	RAP1A, member of RAS oncogene family b.	Uncharacterized protein.	0.900
LOC111650973	LOC111661945	ENSSLDP00000021876	ENSSLDP00000016623	RAP1A, member of RAS oncogene family b.	Uncharacterized protein.	0.900
LOC111661323	LOC111650973	ENSSLDP00000021781	ENSSLDP00000021876	Uncharacterized protein.	RAP1A, member of RAS oncogene family b.	0.900
LOC111661323	LOC111661945	ENSSLDP00000021781	ENSSLDP00000016623	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC111661945	LOC111650973	ENSSLDP00000016623	ENSSLDP00000021876	Uncharacterized protein.	RAP1A, member of RAS oncogene family b.	0.900
LOC111661945	LOC111661323	ENSSLDP00000016623	ENSSLDP00000021781	Uncharacterized protein.	Uncharacterized protein.	0.900