(74 nodes) Small ribosomal subunit network (Seriola lalandi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111644871	Uncharacterized protein. (156 aa)
	ENSSLDP00000000113	Uncharacterized protein. (84 aa)
	mrps18b	Mitochondrial ribosomal protein S18B. (279 aa)
	LOC111649735	Uncharacterized protein. (132 aa)
	LOC111644325	Uncharacterized protein. (132 aa)
	RPS29	Ribosomal protein S29. (101 aa)
	LOC111670113	Ribosomal protein S17. (134 aa)
	fau	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (133 aa)
	LOC111644516	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (152 aa)
	LOC111644582	Ubiquitin-like domain-containing protein. (153 aa)
	LOC111644603	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	ENSSLDP00000001891	40S ribosomal protein S27. (93 aa)
	LOC111644739	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (165 aa)
	ENSSLDP00000025027	Mitochondrial ribosomal protein S27. (187 aa)
	LOC111658328	Mitochondrial ribosomal protein S10. (204 aa)
	rps23	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	rps18	Ribosomal protein S18. (227 aa)
	mrps31	Mitochondrial ribosomal protein S31. (351 aa)
	rps7	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (176 aa)
	rps15	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (145 aa)
	rps28	Ribosomal protein S28. (69 aa)
	mrps6	Mitochondrial ribosomal protein S6. (110 aa)
	rps2	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (280 aa)
	mrps35	Mitochondrial ribosomal protein S35. (334 aa)
	rps5	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (203 aa)
	mrps22	Mitochondrial ribosomal protein S22. (341 aa)
	Rps26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (117 aa)
	mrps18a	Mitochondrial ribosomal protein S18A. (187 aa)
	LOC111652155	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (132 aa)
	mrps7	Mitochondrial ribosomal protein S7. (232 aa)
	mrps18c	Mitochondrial ribosomal protein S18C. (129 aa)
	LOC111645121	Uncharacterized protein. (132 aa)
	LOC111651149	Ribosomal protein S19. (163 aa)
	LOC111645317	Ribosomal_S10 domain-containing protein. (123 aa)
	mcts1	Malignant T-cell-amplified sequence. (181 aa)
	ENSSLDP00000003924	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (128 aa)
	mrps15	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family. (252 aa)
	rps13	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	ENSSLDP00000005075	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (63 aa)
	mrps16	Mitochondrial ribosomal protein S16. (138 aa)
	mrps25	Mitochondrial ribosomal protein S25. (172 aa)
	rps6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
	mrps9	Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (385 aa)
	LOC111650036	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (245 aa)
	dhx29	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1382 aa)
	ENSSLDP00000007858	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (137 aa)
	LOC111658357	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (162 aa)
	ENSSLDP00000009238	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (192 aa)
	LOC111668236	Ribosomal_S10 domain-containing protein. (194 aa)
	rps11	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (161 aa)
	mrps26	Mitochondrial ribosomal protein S26. (207 aa)
	ENSSLDP00000012349	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (92 aa)
	ENSSLDP00000012594	Uncharacterized protein. (126 aa)
	ENSSLDP00000012605	Uncharacterized protein. (81 aa)
	LOC111671347	Uncharacterized protein. (127 aa)
	rps3a	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (266 aa)
	RPS20	Ribosomal protein S20. (119 aa)
	ENSSLDP00000013220	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (170 aa)
	ENSSLDP00000014355	Uncharacterized protein. (54 aa)
	RPS3A	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (248 aa)
	ENSSLDP00000014908	Ribosomal_S5_C domain-containing protein. (81 aa)
	mrps14	Mitochondrial ribosomal protein S14. (138 aa)
	mrps21	Mitochondrial ribosomal protein S21. (87 aa)
	mrps33	Mitochondrial ribosomal protein S33. (106 aa)
	RPS19	Ribosomal protein S19. (152 aa)
	mrps2	Mitochondrial ribosomal protein S2. (269 aa)
	mrps17	Mitochondrial ribosomal protein S17. (148 aa)
	mrps11	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (198 aa)
	dap3	Death associated protein 3. (481 aa)
	mrps12	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (154 aa)
	mrps5	Mitochondrial ribosomal protein S5. (392 aa)
	rpsa	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (301 aa)
	mrps24	Mitochondrial ribosomal protein S24. (171 aa)
	rps16	Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (146 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSLDP00000000113	ENSSLDP00000001891	ENSSLDP00000000113	ENSSLDP00000001891	Uncharacterized protein.	40S ribosomal protein S27.	0.916
ENSSLDP00000000113	ENSSLDP00000003924	ENSSLDP00000000113	ENSSLDP00000003924	Uncharacterized protein.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.975
ENSSLDP00000000113	ENSSLDP00000005075	ENSSLDP00000000113	ENSSLDP00000005075	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
ENSSLDP00000000113	ENSSLDP00000007858	ENSSLDP00000000113	ENSSLDP00000007858	Uncharacterized protein.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.975
ENSSLDP00000000113	ENSSLDP00000009238	ENSSLDP00000000113	ENSSLDP00000009238	Uncharacterized protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.974
ENSSLDP00000000113	ENSSLDP00000012349	ENSSLDP00000000113	ENSSLDP00000012349	Uncharacterized protein.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.975
ENSSLDP00000000113	ENSSLDP00000012594	ENSSLDP00000000113	ENSSLDP00000012594	Uncharacterized protein.	Uncharacterized protein.	0.917
ENSSLDP00000000113	ENSSLDP00000012605	ENSSLDP00000000113	ENSSLDP00000012605	Uncharacterized protein.	Uncharacterized protein.	0.917
ENSSLDP00000000113	ENSSLDP00000013220	ENSSLDP00000000113	ENSSLDP00000013220	Uncharacterized protein.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.917
ENSSLDP00000000113	ENSSLDP00000014908	ENSSLDP00000000113	ENSSLDP00000014908	Uncharacterized protein.	Ribosomal_S5_C domain-containing protein.	0.974
ENSSLDP00000000113	ENSSLDP00000025027	ENSSLDP00000000113	ENSSLDP00000025027	Uncharacterized protein.	Mitochondrial ribosomal protein S27.	0.858
ENSSLDP00000000113	LOC111644325	ENSSLDP00000000113	ENSSLDP00000000874	Uncharacterized protein.	Uncharacterized protein.	0.903
ENSSLDP00000000113	LOC111644516	ENSSLDP00000000113	ENSSLDP00000001449	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.977
ENSSLDP00000000113	LOC111644582	ENSSLDP00000000113	ENSSLDP00000001565	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.990
ENSSLDP00000000113	LOC111644603	ENSSLDP00000000113	ENSSLDP00000001612	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.977
ENSSLDP00000000113	LOC111644739	ENSSLDP00000000113	ENSSLDP00000001954	Uncharacterized protein.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.976
ENSSLDP00000000113	LOC111644871	ENSSLDP00000000113	ENSSLDP00000002305	Uncharacterized protein.	Uncharacterized protein.	0.956
ENSSLDP00000000113	LOC111645121	ENSSLDP00000000113	ENSSLDP00000002743	Uncharacterized protein.	Uncharacterized protein.	0.917
ENSSLDP00000000113	LOC111645317	ENSSLDP00000000113	ENSSLDP00000003282	Uncharacterized protein.	Ribosomal_S10 domain-containing protein.	0.977
ENSSLDP00000000113	LOC111649735	ENSSLDP00000000113	ENSSLDP00000000825	Uncharacterized protein.	Uncharacterized protein.	0.956