48 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111661369	Uncharacterized protein. (759 aa)
	hif1a	Hypoxia inducible factor 1 subunit alpha a. (782 aa)
	LOC111649780	Aryl-hydrocarbon receptor repressor b. (633 aa)
	LOC111665255	Uncharacterized protein. (1151 aa)
	kcnh5	Potassium voltage-gated channel, subfamily H (eag-related), member 5b. (1010 aa)
	LOC111657960	Hypoxia inducible factor 1 subunit alpha, like. (620 aa)
	ncoa1	Nuclear receptor coactivator 1. (1379 aa)
	LOC111660484	Potassium voltage-gated channel, subfamily H (eag-related), member 4a. (1143 aa)
	ncoa2	Nuclear receptor coactivator 2. (1545 aa)
	LOC111667722	Period circadian clock 3. (1274 aa)
	CLOCK	Clock circadian regulator a. (870 aa)
	LOC111656877	Phosphodiesterase. (818 aa)
	LOC111669755	Uncharacterized protein. (1537 aa)
	LOC111645458	Endothelial PAS domain protein 1b. (882 aa)
	LOC111649265	Nuclear receptor coactivator 3. (1551 aa)
	ENSSLDP00000013655	Uncharacterized protein. (355 aa)
	arnt2	Aryl-hydrocarbon receptor nuclear translocator 2. (732 aa)
	LOC111670308	Aryl hydrocarbon receptor 2. (1034 aa)
	LOC111670355	Aryl hydrocarbon receptor 1b. (941 aa)
	LOC111652671	Uncharacterized protein. (1082 aa)
	arntl	Aryl hydrocarbon receptor nuclear translocator-like 1a. (592 aa)
	LOC111653945	Uncharacterized protein. (743 aa)
	pask	PAS domain containing serine/threonine kinase. (1296 aa)
	LOC111653955	Neuronal PAS domain protein 2. (832 aa)
	LOC111652194	Aryl hydrocarbon receptor nuclear translocator. (736 aa)
	LOC111666829	Uncharacterized protein. (933 aa)
	ENSSLDP00000020653	Uncharacterized protein. (1081 aa)
	KCNH7	Potassium voltage-gated channel subfamily H member 7. (1176 aa)
	ARNTL2	Aryl hydrocarbon receptor nuclear translocator like 2. (613 aa)
	kcnh6	Potassium voltage-gated channel, subfamily H (eag-related), member 6a. (1194 aa)
	NPAS3	Neuronal PAS domain protein 3. (746 aa)
	LOC111657089	Uncharacterized protein. (1216 aa)
	ENSSLDP00000025724	Potassium voltage-gated channel, subfamily H (eag-related), member 3. (397 aa)
	ENSSLDP00000027169	Uncharacterized protein. (960 aa)
	SIM1	SIM bHLH transcription factor 1a. (759 aa)
	Npas1	Neuronal PAS domain protein 1. (311 aa)
	per1	Period circadian clock 1b. (1449 aa)
	LOC111655341	Aryl hydrocarbon receptor nuclear translocator-like 2. (639 aa)
	npas4	Neuronal PAS domain protein 4a. (936 aa)
	LOC111673149	Uncharacterized protein. (964 aa)
	LOC111673147	Uncharacterized protein. (969 aa)
	LOC111653530	Period circadian clock 2. (1497 aa)
	kcnh1	Potassium voltage-gated channel, subfamily H (eag-related), member 1a. (955 aa)
	LOC111664538	Uncharacterized protein. (834 aa)
	LOC111658934	PAS domain-containing protein. (581 aa)
	LOC111668886	PAS domain-containing protein. (1179 aa)
	LOC111672437	Potassium channel, voltage gated eag related subfamily H, member 7. (1236 aa)
	ENSSLDP00000033434	Potassium voltage-gated channel, subfamily H (eag-related), member 8. (429 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARNTL2	CLOCK	ENSSLDP00000022613	ENSSLDP00000012208	Aryl hydrocarbon receptor nuclear translocator like 2.	Clock circadian regulator a.	0.837
ARNTL2	LOC111645458	ENSSLDP00000022613	ENSSLDP00000013183	Aryl hydrocarbon receptor nuclear translocator like 2.	Endothelial PAS domain protein 1b.	0.527
ARNTL2	LOC111649780	ENSSLDP00000022613	ENSSLDP00000002445	Aryl hydrocarbon receptor nuclear translocator like 2.	Aryl-hydrocarbon receptor repressor b.	0.566
ARNTL2	LOC111653530	ENSSLDP00000022613	ENSSLDP00000030772	Aryl hydrocarbon receptor nuclear translocator like 2.	Period circadian clock 2.	0.676
ARNTL2	LOC111653955	ENSSLDP00000022613	ENSSLDP00000018594	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 2.	0.837
ARNTL2	LOC111657960	ENSSLDP00000022613	ENSSLDP00000007862	Aryl hydrocarbon receptor nuclear translocator like 2.	Hypoxia inducible factor 1 subunit alpha, like.	0.527
ARNTL2	LOC111658934	ENSSLDP00000022613	ENSSLDP00000031747	Aryl hydrocarbon receptor nuclear translocator like 2.	PAS domain-containing protein.	0.749
ARNTL2	LOC111664538	ENSSLDP00000022613	ENSSLDP00000031531	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.837
ARNTL2	LOC111666829	ENSSLDP00000022613	ENSSLDP00000020486	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.566
ARNTL2	LOC111667722	ENSSLDP00000022613	ENSSLDP00000010626	Aryl hydrocarbon receptor nuclear translocator like 2.	Period circadian clock 3.	0.676
ARNTL2	LOC111668886	ENSSLDP00000022613	ENSSLDP00000032396	Aryl hydrocarbon receptor nuclear translocator like 2.	PAS domain-containing protein.	0.676
ARNTL2	LOC111670308	ENSSLDP00000022613	ENSSLDP00000015317	Aryl hydrocarbon receptor nuclear translocator like 2.	Aryl hydrocarbon receptor 2.	0.566
ARNTL2	LOC111670355	ENSSLDP00000022613	ENSSLDP00000015369	Aryl hydrocarbon receptor nuclear translocator like 2.	Aryl hydrocarbon receptor 1b.	0.566
ARNTL2	LOC111673147	ENSSLDP00000022613	ENSSLDP00000029846	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.566
ARNTL2	LOC111673149	ENSSLDP00000022613	ENSSLDP00000029835	Aryl hydrocarbon receptor nuclear translocator like 2.	Uncharacterized protein.	0.566
ARNTL2	NPAS3	ENSSLDP00000022613	ENSSLDP00000023985	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 3.	0.521
ARNTL2	Npas1	ENSSLDP00000022613	ENSSLDP00000028718	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 1.	0.521
ARNTL2	hif1a	ENSSLDP00000022613	ENSSLDP00000002294	Aryl hydrocarbon receptor nuclear translocator like 2.	Hypoxia inducible factor 1 subunit alpha a.	0.527
ARNTL2	npas4	ENSSLDP00000022613	ENSSLDP00000029641	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 4a.	0.749
ARNTL2	per1	ENSSLDP00000022613	ENSSLDP00000028798	Aryl hydrocarbon receptor nuclear translocator like 2.	Period circadian clock 1b.	0.676