(35 nodes) Chemokine interleukin-8-like domain network (Seriola lalandi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSLDP00000007532	SCY domain-containing protein. (94 aa)
	cxcl13	SCY domain-containing protein. (106 aa)
	LOC111654297	Chemokine (C-C motif) ligand 25b. (101 aa)
	LOC111654275	SCY domain-containing protein. (126 aa)
	LOC111660877	SCY domain-containing protein. (96 aa)
	LOC111660920	SCY domain-containing protein. (109 aa)
	ENSSLDP00000003515	SCY domain-containing protein. (159 aa)
	LOC111647794	SCY domain-containing protein. (99 aa)
	ENSSLDP00000003803	Uncharacterized protein. (94 aa)
	ENSSLDP00000003843	SCY domain-containing protein. (100 aa)
	LOC111646672	SCY domain-containing protein. (103 aa)
	LOC111647131	Chemokine (C-X-C motif) ligand 19. (104 aa)
	ENSSLDP00000010668	SCY domain-containing protein. (84 aa)
	LOC111669132	Chemokine (C-C motif) ligand 25a. (105 aa)
	LOC111670395	SCY domain-containing protein. (114 aa)
	LOC111647875	SCY domain-containing protein. (119 aa)
	LOC111665567	Chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family. (102 aa)
	LOC111658169	Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1). (90 aa)
	LOC111658199	SCY domain-containing protein. (134 aa)
	LOC111670465	SCY domain-containing protein. (91 aa)
	LOC111658812	SCY domain-containing protein. (285 aa)
	LOC111658810	SCY domain-containing protein. (95 aa)
	ENSSLDP00000023059	SCY domain-containing protein. (105 aa)
	LOC111658890	SCY domain-containing protein. (140 aa)
	ENSSLDP00000024331	Uncharacterized protein. (112 aa)
	ENSSLDP00000024671	SCY domain-containing protein. (91 aa)
	LOC111650292	SCY domain-containing protein. (119 aa)
	cxcl14	Chemokine (C-X-C motif) ligand 14. (255 aa)
	ENSSLDP00000030207	C-C motif chemokine. (142 aa)
	LOC111654808	C-C motif chemokine. (101 aa)
	LOC111656636	SCY domain-containing protein. (108 aa)
	LOC111664505	Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family. (99 aa)
	LOC111664504	Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family. (94 aa)
	LOC111645771	C-C motif chemokine. (110 aa)
	LOC111672488	C-C motif chemokine. (114 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSLDP00000003803	ENSSLDP00000007532	ENSSLDP00000003803	ENSSLDP00000007532	Uncharacterized protein.	SCY domain-containing protein.	0.526
ENSSLDP00000003803	ENSSLDP00000010668	ENSSLDP00000003803	ENSSLDP00000010668	Uncharacterized protein.	SCY domain-containing protein.	0.532
ENSSLDP00000003803	LOC111647131	ENSSLDP00000003803	ENSSLDP00000007543	Uncharacterized protein.	Chemokine (C-X-C motif) ligand 19.	0.442
ENSSLDP00000003803	LOC111647794	ENSSLDP00000003803	ENSSLDP00000003663	Uncharacterized protein.	SCY domain-containing protein.	0.903
ENSSLDP00000003803	LOC111654297	ENSSLDP00000003803	ENSSLDP00000001482	Uncharacterized protein.	Chemokine (C-C motif) ligand 25b.	0.532
ENSSLDP00000003803	LOC111658169	ENSSLDP00000003803	ENSSLDP00000019972	Uncharacterized protein.	Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1).	0.521
ENSSLDP00000003803	LOC111664504	ENSSLDP00000003803	ENSSLDP00000032434	Uncharacterized protein.	Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.	0.502
ENSSLDP00000003803	LOC111664505	ENSSLDP00000003803	ENSSLDP00000032429	Uncharacterized protein.	Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.	0.639
ENSSLDP00000003803	LOC111665567	ENSSLDP00000003803	ENSSLDP00000018218	Uncharacterized protein.	Chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	0.521
ENSSLDP00000003803	LOC111669132	ENSSLDP00000003803	ENSSLDP00000011677	Uncharacterized protein.	Chemokine (C-C motif) ligand 25a.	0.532
ENSSLDP00000003803	LOC111670465	ENSSLDP00000003803	ENSSLDP00000022426	Uncharacterized protein.	SCY domain-containing protein.	0.697
ENSSLDP00000003803	cxcl13	ENSSLDP00000003803	ENSSLDP00000000295	Uncharacterized protein.	SCY domain-containing protein.	0.644
ENSSLDP00000003803	cxcl14	ENSSLDP00000003803	ENSSLDP00000029805	Uncharacterized protein.	Chemokine (C-X-C motif) ligand 14.	0.470
ENSSLDP00000007532	ENSSLDP00000003803	ENSSLDP00000007532	ENSSLDP00000003803	SCY domain-containing protein.	Uncharacterized protein.	0.526
ENSSLDP00000007532	ENSSLDP00000010668	ENSSLDP00000007532	ENSSLDP00000010668	SCY domain-containing protein.	SCY domain-containing protein.	0.466
ENSSLDP00000007532	ENSSLDP00000030207	ENSSLDP00000007532	ENSSLDP00000030207	SCY domain-containing protein.	C-C motif chemokine.	0.478
ENSSLDP00000007532	LOC111645771	ENSSLDP00000007532	ENSSLDP00000033153	SCY domain-containing protein.	C-C motif chemokine.	0.405
ENSSLDP00000007532	LOC111647131	ENSSLDP00000007532	ENSSLDP00000007543	SCY domain-containing protein.	Chemokine (C-X-C motif) ligand 19.	0.684
ENSSLDP00000007532	LOC111647794	ENSSLDP00000007532	ENSSLDP00000003663	SCY domain-containing protein.	SCY domain-containing protein.	0.478
ENSSLDP00000007532	LOC111654297	ENSSLDP00000007532	ENSSLDP00000001482	SCY domain-containing protein.	Chemokine (C-C motif) ligand 25b.	0.466