22 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sptlc2	Serine palmitoyltransferase, long chain base subunit 2b. (564 aa)
	alas1	5-aminolevulinate synthase. (626 aa)
	tat	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. (479 aa)
	aadat	Aminoadipate aminotransferase. (425 aa)
	ENSSLDP00000010190	Aminotran_1_2 domain-containing protein. (345 aa)
	LOC111644964	Glutamic-oxaloacetic transaminase 1 like 1. (420 aa)
	GPT	Glutamic--pyruvic transaminase. (491 aa)
	LOC111672180	5-aminolevulinate synthase. (638 aa)
	GOT1	Aspartate aminotransferase. (410 aa)
	LOC111668074	Kynurenine aminotransferase 1. (445 aa)
	LOC111671632	Aminotran_1_2 domain-containing protein. (507 aa)
	LOC111671698	Aminotran_1_2 domain-containing protein. (435 aa)
	sptlc1	Serine palmitoyltransferase, long chain base subunit 1. (472 aa)
	sptlc3	Serine palmitoyltransferase, long chain base subunit 3. (549 aa)
	got2	Aspartate aminotransferase. (428 aa)
	got1	Aspartate aminotransferase. (410 aa)
	kyat3	Kynurenine aminotransferase 3. (449 aa)
	LOC111652945	Glutamic pyruvate transaminase (alanine aminotransferase) 2, like. (516 aa)
	LOC111655360	Aminotran_1_2 domain-containing protein. (981 aa)
	LOC111673710	Aminotran_1_2 domain-containing protein. (531 aa)
	gcat	Glycine C-acetyltransferase. (427 aa)
	LOC111670752	5-aminolevulinate synthase. (591 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSLDP00000010190	GOT1	ENSSLDP00000010190	ENSSLDP00000016094	Aminotran_1_2 domain-containing protein.	Aspartate aminotransferase.	0.444
ENSSLDP00000010190	LOC111644964	ENSSLDP00000010190	ENSSLDP00000011421	Aminotran_1_2 domain-containing protein.	Glutamic-oxaloacetic transaminase 1 like 1.	0.444
ENSSLDP00000010190	got1	ENSSLDP00000010190	ENSSLDP00000024766	Aminotran_1_2 domain-containing protein.	Aspartate aminotransferase.	0.444
ENSSLDP00000010190	got2	ENSSLDP00000010190	ENSSLDP00000023880	Aminotran_1_2 domain-containing protein.	Aspartate aminotransferase.	0.595
GOT1	ENSSLDP00000010190	ENSSLDP00000016094	ENSSLDP00000010190	Aspartate aminotransferase.	Aminotran_1_2 domain-containing protein.	0.444
GOT1	GPT	ENSSLDP00000016094	ENSSLDP00000011745	Aspartate aminotransferase.	Glutamic--pyruvic transaminase.	0.951
GOT1	LOC111644964	ENSSLDP00000016094	ENSSLDP00000011421	Aspartate aminotransferase.	Glutamic-oxaloacetic transaminase 1 like 1.	0.905
GOT1	LOC111652945	ENSSLDP00000016094	ENSSLDP00000027001	Aspartate aminotransferase.	Glutamic pyruvate transaminase (alanine aminotransferase) 2, like.	0.951
GOT1	LOC111668074	ENSSLDP00000016094	ENSSLDP00000019120	Aspartate aminotransferase.	Kynurenine aminotransferase 1.	0.938
GOT1	LOC111671632	ENSSLDP00000016094	ENSSLDP00000020496	Aspartate aminotransferase.	Aminotran_1_2 domain-containing protein.	0.942
GOT1	LOC111671698	ENSSLDP00000016094	ENSSLDP00000021061	Aspartate aminotransferase.	Aminotran_1_2 domain-containing protein.	0.942
GOT1	aadat	ENSSLDP00000016094	ENSSLDP00000007784	Aspartate aminotransferase.	Aminoadipate aminotransferase.	0.454
GOT1	got1	ENSSLDP00000016094	ENSSLDP00000024766	Aspartate aminotransferase.	Aspartate aminotransferase.	0.900
GOT1	got2	ENSSLDP00000016094	ENSSLDP00000023880	Aspartate aminotransferase.	Aspartate aminotransferase.	0.970
GOT1	kyat3	ENSSLDP00000016094	ENSSLDP00000026406	Aspartate aminotransferase.	Kynurenine aminotransferase 3.	0.938
GOT1	tat	ENSSLDP00000016094	ENSSLDP00000005595	Aspartate aminotransferase.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.953
GPT	GOT1	ENSSLDP00000011745	ENSSLDP00000016094	Glutamic--pyruvic transaminase.	Aspartate aminotransferase.	0.951
GPT	LOC111644964	ENSSLDP00000011745	ENSSLDP00000011421	Glutamic--pyruvic transaminase.	Glutamic-oxaloacetic transaminase 1 like 1.	0.951
GPT	LOC111652945	ENSSLDP00000011745	ENSSLDP00000027001	Glutamic--pyruvic transaminase.	Glutamic pyruvate transaminase (alanine aminotransferase) 2, like.	0.901
GPT	LOC111671632	ENSSLDP00000011745	ENSSLDP00000020496	Glutamic--pyruvic transaminase.	Aminotran_1_2 domain-containing protein.	0.904