(20 nodes) EMI domain network (Seriola lalandi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	megf10	Multiple EGF-like-domains 10. (1120 aa)
	mmrn2	Multimerin 2a. (1020 aa)
	umodl1	Uncharacterized protein. (941 aa)
	LOC111672721	Elastin microfibril interfacer 1a. (1028 aa)
	ENSSLDP00000010656	Zgc:158328. (779 aa)
	MEGF11	Multiple EGF like domains 11. (1008 aa)
	emilin1	Elastin microfibril interfacer 1b. (883 aa)
	LOC111655681	Platelet endothelial aggregation receptor 1. (1022 aa)
	egfl7	EGF-like-domain, multiple 7. (294 aa)
	ENSSLDP00000020150	Uncharacterized protein. (507 aa)
	LOC111657009	Elastin microfibril interfacer 2a. (1129 aa)
	sspo	Subcommissural organ spondin. (4327 aa)
	tgfbi	Transforming growth factor, beta-induced. (680 aa)
	LOC111654137	EMI domain-containing protein. (450 aa)
	postn	Periostin, osteoblast specific factor a. (768 aa)
	emilin2	Elastin microfibril interfacer 2b. (999 aa)
	LOC111657806	Periostin, osteoblast specific factor b. (794 aa)
	emid1	EMI domain-containing protein. (486 aa)
	LOC111654171	Elastin microfibril interfacer 3a. (926 aa)
	EMILIN3	Elastin microfibril interfacer 3. (824 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSLDP00000020150	LOC111655681	ENSSLDP00000020150	ENSSLDP00000015488	Uncharacterized protein.	Platelet endothelial aggregation receptor 1.	0.645
ENSSLDP00000020150	MEGF11	ENSSLDP00000020150	ENSSLDP00000011933	Uncharacterized protein.	Multiple EGF like domains 11.	0.800
ENSSLDP00000020150	megf10	ENSSLDP00000020150	ENSSLDP00000021826	Uncharacterized protein.	Multiple EGF-like-domains 10.	0.780
LOC111655681	ENSSLDP00000020150	ENSSLDP00000015488	ENSSLDP00000020150	Platelet endothelial aggregation receptor 1.	Uncharacterized protein.	0.645
MEGF11	ENSSLDP00000020150	ENSSLDP00000011933	ENSSLDP00000020150	Multiple EGF like domains 11.	Uncharacterized protein.	0.800
egfl7	mmrn2	ENSSLDP00000019349	ENSSLDP00000005298	EGF-like-domain, multiple 7.	Multimerin 2a.	0.433
megf10	ENSSLDP00000020150	ENSSLDP00000021826	ENSSLDP00000020150	Multiple EGF-like-domains 10.	Uncharacterized protein.	0.780
mmrn2	egfl7	ENSSLDP00000005298	ENSSLDP00000019349	Multimerin 2a.	EGF-like-domain, multiple 7.	0.433