31 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111648233	Si:ch211-221f10.2. (1393 aa)
	abcc2	Uncharacterized protein. (1559 aa)
	LOC111646004	Uncharacterized protein. (1025 aa)
	ABCC4	ATP binding cassette subfamily C member 4. (1234 aa)
	LOC111655422	Transporter associated with antigen processing, subunit type t, teleost specific. (713 aa)
	LOC111670245	Uncharacterized protein. (1441 aa)
	abcc3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3. (1224 aa)
	tap1	Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP). (741 aa)
	ENSSLDP00000012297	Uncharacterized protein. (594 aa)
	LOC111655613	ATP-binding cassette, sub-family C (CFTR/MRP), member 1. (1380 aa)
	LOC111666706	ATP-binding cassette, sub-family C (CFTR/MRP), member 6a. (1526 aa)
	cftr	Cystic fibrosis transmembrane conductance regulator; Epithelial ion channel that plays an important role in the regulation of epithelial ion and water transport and fluid homeostasis. Mediates the transport of chloride ions across the cell membrane. Channel activity is coupled to ATP hydrolysis. The ion channel is also permeable to HCO(3-); selectivity depends on the extracellular chloride concentration. Exerts its function also by modulating the activity of other ion channels and transporters. Contributes to the regulation of the pH and the ion content of the epithelial fluid layer. (1505 aa)
	abcb7	ATP-binding cassette, sub-family B (MDR/TAP), member 7. (746 aa)
	LOC111654964	ATP-binding cassette, sub-family D (ALD), member 1. (707 aa)
	abcc8	ATP-binding cassette, sub-family C (CFTR/MRP), member 8. (1546 aa)
	LOC111667288	ATP-binding cassette, sub-family D (ALD), member 2. (737 aa)
	LOC111661197	Transporter associated with antigen processing, subunit type a. (718 aa)
	abcd4	ATP-binding cassette, sub-family D (ALD), member 4. (617 aa)
	abcb6	ATP-binding cassette, sub-family B (MDR/TAP), member 6a. (852 aa)
	abcd3	ATP-binding cassette, sub-family D (ALD), member 3a. (534 aa)
	abcb9	Uncharacterized protein. (813 aa)
	abcb8	ATP-binding cassette, sub-family B (MDR/TAP), member 8. (708 aa)
	abcb1	ATP-binding cassette, sub-family B (MDR/TAP), member 4. (1293 aa)
	abcc12	ATP-binding cassette, sub-family C (CFTR/MRP), member 12. (1379 aa)
	abcc10	ATP-binding cassette, sub-family C (CFTR/MRP), member 10. (1460 aa)
	LOC111654523	ATP-binding cassette, sub-family B (MDR/TAP), member 11a. (1310 aa)
	LOC111657662	ATP-binding cassette, sub-family C (CFTR/MRP), member 9. (1532 aa)
	abcb10	ATP-binding cassette, sub-family B (MDR/TAP), member 10. (720 aa)
	abcc5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5. (1158 aa)
	LOC111672425	ATP-binding cassette, sub-family B (MDR/TAP), member 11b. (1327 aa)
	LOC111672431	ATP-binding cassette, sub-family C (CFTR/MRP), member 4. (1242 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCC4	LOC111646004	ENSSLDP00000002260	ENSSLDP00000002821	ATP binding cassette subfamily C member 4.	Uncharacterized protein.	0.902
ABCC4	abcb7	ENSSLDP00000002260	ENSSLDP00000011137	ATP binding cassette subfamily C member 4.	ATP-binding cassette, sub-family B (MDR/TAP), member 7.	0.405
ENSSLDP00000012297	abcb7	ENSSLDP00000012297	ENSSLDP00000011137	Uncharacterized protein.	ATP-binding cassette, sub-family B (MDR/TAP), member 7.	0.405
LOC111646004	ABCC4	ENSSLDP00000002821	ENSSLDP00000002260	Uncharacterized protein.	ATP binding cassette subfamily C member 4.	0.902
LOC111646004	abcb7	ENSSLDP00000002821	ENSSLDP00000011137	Uncharacterized protein.	ATP-binding cassette, sub-family B (MDR/TAP), member 7.	0.405
LOC111648233	abcb7	ENSSLDP00000005647	ENSSLDP00000011137	Si:ch211-221f10.2.	ATP-binding cassette, sub-family B (MDR/TAP), member 7.	0.405
LOC111654523	LOC111655613	ENSSLDP00000019751	ENSSLDP00000012037	ATP-binding cassette, sub-family B (MDR/TAP), member 11a.	ATP-binding cassette, sub-family C (CFTR/MRP), member 1.	0.406
LOC111654523	LOC111666706	ENSSLDP00000019751	ENSSLDP00000011824	ATP-binding cassette, sub-family B (MDR/TAP), member 11a.	ATP-binding cassette, sub-family C (CFTR/MRP), member 6a.	0.406
LOC111654523	LOC111670245	ENSSLDP00000019751	ENSSLDP00000008970	ATP-binding cassette, sub-family B (MDR/TAP), member 11a.	Uncharacterized protein.	0.406
LOC111654523	LOC111672425	ENSSLDP00000019751	ENSSLDP00000032757	ATP-binding cassette, sub-family B (MDR/TAP), member 11a.	ATP-binding cassette, sub-family B (MDR/TAP), member 11b.	0.901
LOC111654523	abcb6	ENSSLDP00000019751	ENSSLDP00000016389	ATP-binding cassette, sub-family B (MDR/TAP), member 11a.	ATP-binding cassette, sub-family B (MDR/TAP), member 6a.	0.410
LOC111654523	abcb7	ENSSLDP00000019751	ENSSLDP00000011137	ATP-binding cassette, sub-family B (MDR/TAP), member 11a.	ATP-binding cassette, sub-family B (MDR/TAP), member 7.	0.547
LOC111654523	abcc2	ENSSLDP00000019751	ENSSLDP00000002931	ATP-binding cassette, sub-family B (MDR/TAP), member 11a.	Uncharacterized protein.	0.425
LOC111654523	abcc3	ENSSLDP00000019751	ENSSLDP00000013954	ATP-binding cassette, sub-family B (MDR/TAP), member 11a.	ATP-binding cassette, sub-family C (CFTR/MRP), member 3.	0.406
LOC111654964	abcd3	ENSSLDP00000007842	ENSSLDP00000016407	ATP-binding cassette, sub-family D (ALD), member 1.	ATP-binding cassette, sub-family D (ALD), member 3a.	0.772
LOC111654964	abcd4	ENSSLDP00000007842	ENSSLDP00000016279	ATP-binding cassette, sub-family D (ALD), member 1.	ATP-binding cassette, sub-family D (ALD), member 4.	0.722
LOC111655422	LOC111661197	ENSSLDP00000000759	ENSSLDP00000015603	Transporter associated with antigen processing, subunit type t, teleost specific.	Transporter associated with antigen processing, subunit type a.	0.904
LOC111655422	abcb7	ENSSLDP00000000759	ENSSLDP00000011137	Transporter associated with antigen processing, subunit type t, teleost specific.	ATP-binding cassette, sub-family B (MDR/TAP), member 7.	0.608
LOC111655422	tap1	ENSSLDP00000000759	ENSSLDP00000013849	Transporter associated with antigen processing, subunit type t, teleost specific.	Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP).	0.924
LOC111655613	LOC111654523	ENSSLDP00000012037	ENSSLDP00000019751	ATP-binding cassette, sub-family C (CFTR/MRP), member 1.	ATP-binding cassette, sub-family B (MDR/TAP), member 11a.	0.406