25 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111659112	Talin 2a. (2540 aa)
	LOC111644184	Tyrosine-protein kinase. (550 aa)
	APBB1IP	Uncharacterized protein. (432 aa)
	nedd9	Neural precursor cell expressed, developmentally down-regulated 9. (803 aa)
	tlnrd1	Talin rod domain containing 1. (354 aa)
	LOC111644467	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1b. (901 aa)
	LOC111661945	Uncharacterized protein. (185 aa)
	cass4	Cas scaffold protein family member 4. (804 aa)
	LOC111661323	Uncharacterized protein. (184 aa)
	LOC111650973	RAP1A, member of RAS oncogene family b. (185 aa)
	fga	Fibrinogen alpha chain. (739 aa)
	fgb	Fibrinogen beta chain. (491 aa)
	itgb3	Integrin beta; Belongs to the integrin beta chain family. (789 aa)
	LOC111671297	CRK proto-oncogene, adaptor protein. (315 aa)
	LOC111645838	Uncharacterized protein. (548 aa)
	LOC111667065	Talin 2b. (2542 aa)
	fgg	Fibrinogen gamma chain. (432 aa)
	LOC111659609	Talin 1. (2541 aa)
	ENSSLDP00000029322	Fibronectin type-III domain-containing protein. (121 aa)
	LOC111668768	Fibronectin 1a. (2181 aa)
	apbb1ip	Amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein. (679 aa)
	src	Tyrosine-protein kinase. (550 aa)
	LOC111658453	Integrin beta; Belongs to the integrin beta chain family. (796 aa)
	bcar1	BCAR1 scaffold protein, Cas family member. (962 aa)
	LOC111656071	Uncharacterized protein. (318 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APBB1IP	LOC111650973	ENSSLDP00000007280	ENSSLDP00000021876	Uncharacterized protein.	RAP1A, member of RAS oncogene family b.	0.783
APBB1IP	LOC111656071	ENSSLDP00000007280	ENSSLDP00000004486	Uncharacterized protein.	Uncharacterized protein.	0.558
APBB1IP	LOC111659112	ENSSLDP00000007280	ENSSLDP00000005610	Uncharacterized protein.	Talin 2a.	0.741
APBB1IP	LOC111659609	ENSSLDP00000007280	ENSSLDP00000029833	Uncharacterized protein.	Talin 1.	0.741
APBB1IP	LOC111661323	ENSSLDP00000007280	ENSSLDP00000021781	Uncharacterized protein.	Uncharacterized protein.	0.783
APBB1IP	LOC111661945	ENSSLDP00000007280	ENSSLDP00000016623	Uncharacterized protein.	Uncharacterized protein.	0.783
APBB1IP	LOC111667065	ENSSLDP00000007280	ENSSLDP00000032431	Uncharacterized protein.	Talin 2b.	0.741
APBB1IP	LOC111671297	ENSSLDP00000007280	ENSSLDP00000033258	Uncharacterized protein.	CRK proto-oncogene, adaptor protein.	0.558
APBB1IP	bcar1	ENSSLDP00000007280	ENSSLDP00000003436	Uncharacterized protein.	BCAR1 scaffold protein, Cas family member.	0.512
APBB1IP	cass4	ENSSLDP00000007280	ENSSLDP00000021585	Uncharacterized protein.	Cas scaffold protein family member 4.	0.421
APBB1IP	nedd9	ENSSLDP00000007280	ENSSLDP00000011729	Uncharacterized protein.	Neural precursor cell expressed, developmentally down-regulated 9.	0.511
APBB1IP	tlnrd1	ENSSLDP00000007280	ENSSLDP00000013985	Uncharacterized protein.	Talin rod domain containing 1.	0.741
ENSSLDP00000029322	LOC111658453	ENSSLDP00000029322	ENSSLDP00000002639	Fibronectin type-III domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.928
ENSSLDP00000029322	fgb	ENSSLDP00000029322	ENSSLDP00000023278	Fibronectin type-III domain-containing protein.	Fibrinogen beta chain.	0.433
ENSSLDP00000029322	itgb3	ENSSLDP00000029322	ENSSLDP00000023826	Fibronectin type-III domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.928
LOC111644184	LOC111656071	ENSSLDP00000005965	ENSSLDP00000004486	Tyrosine-protein kinase.	Uncharacterized protein.	0.509
LOC111644184	LOC111659609	ENSSLDP00000005965	ENSSLDP00000029833	Tyrosine-protein kinase.	Talin 1.	0.486
LOC111644184	LOC111671297	ENSSLDP00000005965	ENSSLDP00000033258	Tyrosine-protein kinase.	CRK proto-oncogene, adaptor protein.	0.509
LOC111644184	bcar1	ENSSLDP00000005965	ENSSLDP00000003436	Tyrosine-protein kinase.	BCAR1 scaffold protein, Cas family member.	0.556
LOC111644184	cass4	ENSSLDP00000005965	ENSSLDP00000021585	Tyrosine-protein kinase.	Cas scaffold protein family member 4.	0.469