41 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSLDP00000014485	Protein kinase domain-containing protein. (98 aa)
	LOC111657812	Doublecortin-like kinase 1b. (759 aa)
	LOC111664590	THAP-type domain-containing protein. (502 aa)
	LOC111668990	CaM kinase-like vesicle-associated, like. (809 aa)
	prkar1a	Protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) b. (370 aa)
	LOC111657851	CaM kinase-like vesicle-associated a. (414 aa)
	LOC111658500	Uncharacterized protein; Belongs to the protein kinase superfamily. (351 aa)
	LOC111649832	Ribosomal protein S6 kinase. (727 aa)
	LOC111668433	cAMP responsive element modulator a. (256 aa)
	LOC111653688	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily. (351 aa)
	LOC111673830	Calcium/calmodulin-dependent protein kinase IGb; Belongs to the protein kinase superfamily. (437 aa)
	CREB1	cAMP responsive element binding protein 1. (318 aa)
	LOC111666817	Uncharacterized protein. (513 aa)
	ENSSLDP00000010006	Uncharacterized protein; Belongs to the protein kinase superfamily. (337 aa)
	LOC111667225	Protein kinase cAMP-dependent type I regulatory subunit alpha. (379 aa)
	LOC111647316	Non-specific serine/threonine protein kinase. (676 aa)
	LOC111667803	Calcium/calmodulin-dependent protein kinase Ib. (412 aa)
	prkar2b	Protein kinase cAMP-dependent type II regulatory subunit beta. (404 aa)
	camkv	CaM kinase-like vesicle-associated b. (449 aa)
	LOC111650664	Calcium/calmodulin-dependent protein kinase kinase 1, alpha b; Belongs to the protein kinase superfamily. (478 aa)
	LOC111652073	KID domain-containing protein. (162 aa)
	LOC111670867	Calcium/calmodulin-dependent protein kinase 1Db; Belongs to the protein kinase superfamily. (412 aa)
	stk33	Serine/threonine kinase 33; Belongs to the protein kinase superfamily. (304 aa)
	prkaca	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily. (343 aa)
	LOC111668587	Protein kinase domain-containing protein. (427 aa)
	LOC111665036	Neurogranin-like. (513 aa)
	camkk1	Calcium/calmodulin-dependent protein kinase kinase 1, alpha a. (512 aa)
	LOC111665114	Protein kinase, cAMP-dependent, regulatory, type II, alpha A. (391 aa)
	prkar1b	Protein kinase, cAMP-dependent, regulatory, type I, beta. (380 aa)
	LOC111652996	Si:ch73-62l21.1; Belongs to the protein kinase superfamily. (480 aa)
	LOC111673158	cAMP responsive element binding protein 1b. (330 aa)
	dclk1	Doublecortin-like kinase 1a. (723 aa)
	LOC111660824	Protein kinase, cAMP-dependent, regulatory, type II, alpha, B. (378 aa)
	LOC111646474	Ribosomal protein S6 kinase. (727 aa)
	LOC111660855	Calcium/calmodulin-dependent protein kinase Ia; Belongs to the protein kinase superfamily. (396 aa)
	LOC111645787	Si:ch211-27e6.1; Belongs to the protein kinase superfamily. (431 aa)
	LOC111645936	Ribosomal protein S6 kinase. (728 aa)
	pskh1	Protein serine kinase H1; Belongs to the protein kinase superfamily. (436 aa)
	LOC111671585	Si:ch73-60h1.1; Belongs to the protein kinase superfamily. (478 aa)
	camk1d	Calcium/calmodulin-dependent protein kinase 1Da; Belongs to the protein kinase superfamily. (437 aa)
	prkx	Protein kinase X-linked; Belongs to the protein kinase superfamily. (352 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CREB1	LOC111645936	ENSSLDP00000007541	ENSSLDP00000033544	cAMP responsive element binding protein 1.	Ribosomal protein S6 kinase.	0.444
CREB1	LOC111646474	ENSSLDP00000007541	ENSSLDP00000031343	cAMP responsive element binding protein 1.	Ribosomal protein S6 kinase.	0.444
CREB1	LOC111647316	ENSSLDP00000007541	ENSSLDP00000010743	cAMP responsive element binding protein 1.	Non-specific serine/threonine protein kinase.	0.444
CREB1	LOC111649832	ENSSLDP00000007541	ENSSLDP00000003957	cAMP responsive element binding protein 1.	Ribosomal protein S6 kinase.	0.444
CREB1	LOC111652073	ENSSLDP00000007541	ENSSLDP00000012994	cAMP responsive element binding protein 1.	KID domain-containing protein.	0.900
CREB1	LOC111653688	ENSSLDP00000007541	ENSSLDP00000004665	cAMP responsive element binding protein 1.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	0.721
CREB1	LOC111658500	ENSSLDP00000007541	ENSSLDP00000003336	cAMP responsive element binding protein 1.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.721
CREB1	LOC111671585	ENSSLDP00000007541	ENSSLDP00000017571	cAMP responsive element binding protein 1.	Si:ch73-60h1.1; Belongs to the protein kinase superfamily.	0.453
CREB1	LOC111673158	ENSSLDP00000007541	ENSSLDP00000029612	cAMP responsive element binding protein 1.	cAMP responsive element binding protein 1b.	0.900
CREB1	prkaca	ENSSLDP00000007541	ENSSLDP00000020068	cAMP responsive element binding protein 1.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily.	0.721
ENSSLDP00000010006	LOC111660824	ENSSLDP00000010006	ENSSLDP00000030352	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase, cAMP-dependent, regulatory, type II, alpha, B.	0.749
ENSSLDP00000010006	LOC111665114	ENSSLDP00000010006	ENSSLDP00000026779	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase, cAMP-dependent, regulatory, type II, alpha A.	0.749
ENSSLDP00000010006	LOC111667225	ENSSLDP00000010006	ENSSLDP00000010336	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase cAMP-dependent type I regulatory subunit alpha.	0.749
ENSSLDP00000010006	prkar1a	ENSSLDP00000010006	ENSSLDP00000002717	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) b.	0.749
ENSSLDP00000010006	prkar1b	ENSSLDP00000010006	ENSSLDP00000028853	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase, cAMP-dependent, regulatory, type I, beta.	0.863
ENSSLDP00000010006	prkar2b	ENSSLDP00000010006	ENSSLDP00000012178	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase cAMP-dependent type II regulatory subunit beta.	0.749
LOC111645936	CREB1	ENSSLDP00000033544	ENSSLDP00000007541	Ribosomal protein S6 kinase.	cAMP responsive element binding protein 1.	0.444
LOC111645936	LOC111649832	ENSSLDP00000033544	ENSSLDP00000003957	Ribosomal protein S6 kinase.	Ribosomal protein S6 kinase.	0.425
LOC111645936	LOC111652073	ENSSLDP00000033544	ENSSLDP00000012994	Ribosomal protein S6 kinase.	KID domain-containing protein.	0.444
LOC111645936	LOC111668433	ENSSLDP00000033544	ENSSLDP00000004465	Ribosomal protein S6 kinase.	cAMP responsive element modulator a.	0.444