STRINGSTRING
polr2f polr2f mnat1 mnat1 LOC111644445 LOC111644445 xab2 xab2 LOC111644582 LOC111644582 polr2g polr2g cul4a cul4a tcea2 tcea2 polr2h polr2h cdk7 cdk7 cul4b cul4b prpf19 prpf19 polr2c polr2c LOC111645827 LOC111645827 ENSSLDP00000005022 ENSSLDP00000005022 ENSSLDP00000005439 ENSSLDP00000005439 POLR2E POLR2E LOC111663555 LOC111663555 ppp1r42 ppp1r42 cops5 cops5 ENSSLDP00000008454 ENSSLDP00000008454 uba52 uba52 LOC111650935 LOC111650935 uvssa uvssa usp7 usp7 ENSSLDP00000010749 ENSSLDP00000010749 ENSSLDP00000010825 ENSSLDP00000010825 ercc3 ercc3 gps1 gps1 cops2 cops2 polr2i polr2i LOC111646106 LOC111646106 LOC111647896 LOC111647896 ZNF830 ZNF830 ppie ppie cops4 cops4 polr2k polr2k tcea1 tcea1 ercc6 ercc6 ddb1 ddb1 ENSSLDP00000020317 ENSSLDP00000020317 tcea3 tcea3 polr2b polr2b ccnh ccnh tceanc2 tceanc2 xpa xpa gtf2h3 gtf2h3 rbx1 rbx1 LOC111647585 LOC111647585 gtf2h5 gtf2h5 ercc2 ercc2 ercc8 ercc8 polr2a polr2a LOC111671125 LOC111671125 cops3 cops3 aqr aqr LOC111656521 LOC111656521 polr2j polr2j gtf2h1 gtf2h1 nrde2 nrde2 LOC111646515 LOC111646515 polr2l polr2l COPS6 COPS6 polr2d polr2d cops7a cops7a LOC111671234 LOC111671234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
mnat1MNAT1 component of CDK activating kinase. (236 aa)
LOC111644445KxDL domain-containing protein. (126 aa)
xab2XPA binding protein 2. (849 aa)
LOC111644582Ubiquitin-like domain-containing protein. (153 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (172 aa)
cul4aCullin 4A; Belongs to the cullin family. (719 aa)
tcea2Transcription elongation factor A (SII), 2. (302 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
cul4bCullin 4B; Belongs to the cullin family. (871 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
LOC111645827Ribosomal_L40e domain-containing protein. (128 aa)
ENSSLDP00000005022COP9 signalosome subunit 8. (202 aa)
ENSSLDP00000005439TFIIS central domain-containing protein. (179 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
LOC111663555Si:ch73-1a9.3. (81 aa)
ppp1r42Protein phosphatase 1, regulatory subunit 42. (303 aa)
cops5COP9 signalosome subunit 5. (333 aa)
ENSSLDP00000008454PH_TFIIH domain-containing protein. (61 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
LOC111650935Polyubiquitin-like. (75 aa)
uvssaUV-stimulated scaffold protein A. (592 aa)
usp7Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (998 aa)
ENSSLDP00000010749Uncharacterized protein. (112 aa)
ENSSLDP00000010825Ubiquitin-like domain-containing protein. (114 aa)
ercc3Excision repair cross-complementation group 3. (803 aa)
gps1G protein pathway suppressor 1. (487 aa)
cops2COP9 signalosome subunit 2. (443 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
LOC111646106E1A binding protein p300 a. (2843 aa)
LOC111647896General transcription factor IIH subunit. (392 aa)
ZNF830Zinc finger protein 830. (346 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (302 aa)
cops4COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (406 aa)
polr2kPolymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
tcea1Transcription elongation factor A (SII), 1. (310 aa)
ercc6Excision repair cross-complementation group 6. (1394 aa)
ddb1Damage-specific DNA binding protein 1. (1140 aa)
ENSSLDP00000020317General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (427 aa)
tcea3Transcription elongation factor A (SII), 3. (369 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
ccnhCyclin H; Belongs to the cyclin family. (319 aa)
tceanc2Uncharacterized protein. (207 aa)
xpaXeroderma pigmentosum, complementation group A. (275 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (278 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (108 aa)
LOC111647585E1A binding protein p300 b. (2679 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (91 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
ercc8Excision repair cross-complementation group 8. (400 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1966 aa)
LOC111671125Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
cops3COP9 signalosome subunit 3. (423 aa)
aqrAquarius intron-binding spliceosomal factor. (1358 aa)
LOC111656521ISY1 splicing factor homolog. (283 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
nrde2NRDE-2, necessary for RNA interference, domain containing. (1071 aa)
LOC111646515High mobility group nucleosomal binding domain 7. (96 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
COPS6COP9 signalosome subunit 6. (316 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (145 aa)
cops7aPCI domain-containing protein. (253 aa)
LOC111671234KxDL motif containing 1. (184 aa)
Your Current Organism:
Seriola lalandi
NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis
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