STRINGSTRING
mnat1 mnat1 LOC111644445 LOC111644445 xab2 xab2 LOC111668343 LOC111668343 LOC111665312 LOC111665312 pole4 pole4 LOC111654275 LOC111654275 LOC111644582 LOC111644582 rfc1 rfc1 polr2g polr2g cul4a cul4a tcea2 tcea2 polr2h polr2h cdk7 cdk7 cul4b cul4b rpa2 rpa2 prpf19 prpf19 polr2c polr2c polk polk LOC111645827 LOC111645827 ENSSLDP00000005439 ENSSLDP00000005439 POLR2E POLR2E meiob meiob pcna pcna LOC111663555 LOC111663555 pold3 pold3 ercc1 ercc1 ENSSLDP00000008164 ENSSLDP00000008164 pold1 pold1 ENSSLDP00000008454 ENSSLDP00000008454 uba52 uba52 LOC111650935 LOC111650935 ercc4 ercc4 uvssa uvssa usp7 usp7 ENSSLDP00000010825 ENSSLDP00000010825 ENSSLDP00000010871 ENSSLDP00000010871 ercc3 ercc3 polr2i polr2i LOC111646106 LOC111646106 rfc2 rfc2 LOC111647896 LOC111647896 LOC111653873 LOC111653873 ZNF830 ZNF830 pold2 pold2 RCBTB1 RCBTB1 ppie ppie polr2k polr2k bivm bivm rfc5 rfc5 tcea1 tcea1 ercc6 ercc6 ddb1 ddb1 ENSSLDP00000020317 ENSSLDP00000020317 tcea3 tcea3 ENSSLDP00000021278 ENSSLDP00000021278 polr2b polr2b ccnh ccnh tceanc2 tceanc2 xpa xpa gtf2h3 gtf2h3 rbx1 rbx1 LOC111647585 LOC111647585 pole2 pole2 rfc4 rfc4 phf3 phf3 ENSSLDP00000025665 ENSSLDP00000025665 gtf2h5 gtf2h5 ENSSLDP00000025900 ENSSLDP00000025900 ercc2 ercc2 ENSSLDP00000026410 ENSSLDP00000026410 ercc8 ercc8 polr2a polr2a RPA1 RPA1 LOC111671125 LOC111671125 aqr aqr usp40 usp40 LOC111656521 LOC111656521 LOC111654742 LOC111654742 polr2j polr2j gtf2h1 gtf2h1 rfc3 rfc3 rpa3 rpa3 nrde2 nrde2 LOC111646515 LOC111646515 polr2l polr2l pole3 pole3 polr2d polr2d LOC111671234 LOC111671234 polr2f polr2f pole pole atad5 atad5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
mnat1MNAT1 component of CDK activating kinase. (236 aa)
LOC111644445KxDL domain-containing protein. (126 aa)
xab2XPA binding protein 2. (849 aa)
LOC111668343Excision repair cross-complementation group 5. (982 aa)
LOC111665312Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (531 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (129 aa)
LOC111654275SCY domain-containing protein. (126 aa)
LOC111644582Ubiquitin-like domain-containing protein. (153 aa)
rfc1Replication factor C subunit 1. (1105 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (172 aa)
cul4aCullin 4A; Belongs to the cullin family. (719 aa)
tcea2Transcription elongation factor A (SII), 2. (302 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
cul4bCullin 4B; Belongs to the cullin family. (871 aa)
rpa2Replication protein A2. (278 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
polkPolymerase (DNA directed) kappa. (883 aa)
LOC111645827Ribosomal_L40e domain-containing protein. (128 aa)
ENSSLDP00000005439TFIIS central domain-containing protein. (179 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
meiobMethionine sulfoxide reductase B1b. (444 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
LOC111663555Si:ch73-1a9.3. (81 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (444 aa)
ercc1Excision repair cross-complementation group 1. (357 aa)
ENSSLDP00000008164Uncharacterized protein. (93 aa)
pold1DNA polymerase. (1105 aa)
ENSSLDP00000008454PH_TFIIH domain-containing protein. (61 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
LOC111650935Polyubiquitin-like. (75 aa)
ercc4Excision repair cross-complementation group 4. (901 aa)
uvssaUV-stimulated scaffold protein A. (592 aa)
usp7Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (998 aa)
ENSSLDP00000010825Ubiquitin-like domain-containing protein. (114 aa)
ENSSLDP00000010871Uncharacterized protein. (72 aa)
ercc3Excision repair cross-complementation group 3. (803 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
LOC111646106E1A binding protein p300 a. (2843 aa)
rfc2Replication factor C (activator 1) 2. (387 aa)
LOC111647896General transcription factor IIH subunit. (392 aa)
LOC111653873Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (600 aa)
ZNF830Zinc finger protein 830. (346 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (471 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (302 aa)
polr2kPolymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
bivmBasic, immunoglobulin-like variable motif containing. (499 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
tcea1Transcription elongation factor A (SII), 1. (310 aa)
ercc6Excision repair cross-complementation group 6. (1394 aa)
ddb1Damage-specific DNA binding protein 1. (1140 aa)
ENSSLDP00000020317General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (427 aa)
tcea3Transcription elongation factor A (SII), 3. (369 aa)
ENSSLDP00000021278ATPase family AAA domain containing 5b. (887 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
ccnhCyclin H; Belongs to the cyclin family. (319 aa)
tceanc2Uncharacterized protein. (207 aa)
xpaXeroderma pigmentosum, complementation group A. (275 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (278 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (108 aa)
LOC111647585E1A binding protein p300 b. (2679 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (491 aa)
rfc4Replication factor C (activator 1) 4. (359 aa)
phf3PHD finger protein 3. (1669 aa)
ENSSLDP00000025665Uncharacterized protein. (99 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (91 aa)
ENSSLDP00000025900Uncharacterized protein. (92 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
ENSSLDP00000026410RPA_C domain-containing protein. (232 aa)
ercc8Excision repair cross-complementation group 8. (400 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1966 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (685 aa)
LOC111671125Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
aqrAquarius intron-binding spliceosomal factor. (1358 aa)
usp40Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family. (1270 aa)
LOC111656521ISY1 splicing factor homolog. (283 aa)
LOC111654742Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
rpa3Replication protein A3. (122 aa)
nrde2NRDE-2, necessary for RNA interference, domain containing. (1071 aa)
LOC111646515High mobility group nucleosomal binding domain 7. (96 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (146 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (145 aa)
LOC111671234KxDL motif containing 1. (184 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2295 aa)
atad5ATPase family AAA domain containing 5a. (1693 aa)
Your Current Organism:
Seriola lalandi
NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis
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