STRINGSTRING
polr2b polr2b mnat1 mnat1 LOC111644445 LOC111644445 xab2 xab2 LOC111665312 LOC111665312 pole4 pole4 LOC111644582 LOC111644582 rfc1 rfc1 polr2g polr2g cul4a cul4a tcea2 tcea2 polr2h polr2h cdk7 cdk7 lig3 lig3 cul4b cul4b rpa2 rpa2 prpf19 prpf19 polr2c polr2c ccnh ccnh polk polk LOC111645827 LOC111645827 ENSSLDP00000005439 ENSSLDP00000005439 POLR2E POLR2E meiob meiob pcna pcna LOC111663555 LOC111663555 pold3 pold3 ENSSLDP00000008164 ENSSLDP00000008164 lig1 lig1 pold1 pold1 ENSSLDP00000008454 ENSSLDP00000008454 uba52 uba52 LOC111650935 LOC111650935 uvssa uvssa usp7 usp7 atad5 atad5 pole pole polr2f polr2f LOC111671234 LOC111671234 polr2d polr2d pole3 pole3 polr2l polr2l LOC111646515 LOC111646515 nrde2 nrde2 rpa3 rpa3 rfc3 rfc3 gtf2h1 gtf2h1 polr2j polr2j LOC111654742 LOC111654742 LOC111656521 LOC111656521 xrcc1 xrcc1 usp40 usp40 aqr aqr LOC111671125 LOC111671125 RPA1 RPA1 polr2a polr2a ercc8 ercc8 ENSSLDP00000026410 ENSSLDP00000026410 ercc2 ercc2 ENSSLDP00000025900 ENSSLDP00000025900 gtf2h5 gtf2h5 ENSSLDP00000025665 ENSSLDP00000025665 phf3 phf3 rfc4 rfc4 pole2 pole2 LOC111647585 LOC111647585 rbx1 rbx1 gtf2h3 gtf2h3 tceanc2 tceanc2 ENSSLDP00000010825 ENSSLDP00000010825 ENSSLDP00000010871 ENSSLDP00000010871 ercc3 ercc3 polr2i polr2i LOC111646106 LOC111646106 rfc2 rfc2 LOC111647896 LOC111647896 LOC111650719 LOC111650719 LOC111653873 LOC111653873 ZNF830 ZNF830 pold2 pold2 RCBTB1 RCBTB1 ppie ppie polr2k polr2k rfc5 rfc5 tcea1 tcea1 ercc6 ercc6 ddb1 ddb1 ENSSLDP00000020317 ENSSLDP00000020317 tcea3 tcea3 ENSSLDP00000021278 ENSSLDP00000021278
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
mnat1MNAT1 component of CDK activating kinase. (236 aa)
LOC111644445KxDL domain-containing protein. (126 aa)
xab2XPA binding protein 2. (849 aa)
LOC111665312Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (531 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (129 aa)
LOC111644582Ubiquitin-like domain-containing protein. (153 aa)
rfc1Replication factor C subunit 1. (1105 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (172 aa)
cul4aCullin 4A; Belongs to the cullin family. (719 aa)
tcea2Transcription elongation factor A (SII), 2. (302 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
lig3DNA ligase. (1013 aa)
cul4bCullin 4B; Belongs to the cullin family. (871 aa)
rpa2Replication protein A2. (278 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
ccnhCyclin H; Belongs to the cyclin family. (319 aa)
polkPolymerase (DNA directed) kappa. (883 aa)
LOC111645827Ribosomal_L40e domain-containing protein. (128 aa)
ENSSLDP00000005439TFIIS central domain-containing protein. (179 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
meiobMethionine sulfoxide reductase B1b. (444 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
LOC111663555Si:ch73-1a9.3. (81 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (444 aa)
ENSSLDP00000008164Uncharacterized protein. (93 aa)
lig1DNA ligase. (1018 aa)
pold1DNA polymerase. (1105 aa)
ENSSLDP00000008454PH_TFIIH domain-containing protein. (61 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
LOC111650935Polyubiquitin-like. (75 aa)
uvssaUV-stimulated scaffold protein A. (592 aa)
usp7Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (998 aa)
atad5ATPase family AAA domain containing 5a. (1693 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2295 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
LOC111671234KxDL motif containing 1. (184 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (145 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (146 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
LOC111646515High mobility group nucleosomal binding domain 7. (96 aa)
nrde2NRDE-2, necessary for RNA interference, domain containing. (1071 aa)
rpa3Replication protein A3. (122 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
LOC111654742Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
LOC111656521ISY1 splicing factor homolog. (283 aa)
xrcc1X-ray repair complementing defective repair in Chinese hamster cells 1. (540 aa)
usp40Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family. (1270 aa)
aqrAquarius intron-binding spliceosomal factor. (1358 aa)
LOC111671125Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (685 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1966 aa)
ercc8Excision repair cross-complementation group 8. (400 aa)
ENSSLDP00000026410RPA_C domain-containing protein. (232 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
ENSSLDP00000025900Uncharacterized protein. (92 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (91 aa)
ENSSLDP00000025665Uncharacterized protein. (99 aa)
phf3PHD finger protein 3. (1669 aa)
rfc4Replication factor C (activator 1) 4. (359 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (491 aa)
LOC111647585E1A binding protein p300 b. (2679 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (108 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (278 aa)
tceanc2Uncharacterized protein. (207 aa)
ENSSLDP00000010825Ubiquitin-like domain-containing protein. (114 aa)
ENSSLDP00000010871Uncharacterized protein. (72 aa)
ercc3Excision repair cross-complementation group 3. (803 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
LOC111646106E1A binding protein p300 a. (2843 aa)
rfc2Replication factor C (activator 1) 2. (387 aa)
LOC111647896General transcription factor IIH subunit. (392 aa)
LOC111650719XRCC1_N domain-containing protein. (104 aa)
LOC111653873Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (600 aa)
ZNF830Zinc finger protein 830. (346 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (471 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (302 aa)
polr2kPolymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
tcea1Transcription elongation factor A (SII), 1. (310 aa)
ercc6Excision repair cross-complementation group 6. (1394 aa)
ddb1Damage-specific DNA binding protein 1. (1140 aa)
ENSSLDP00000020317General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (427 aa)
tcea3Transcription elongation factor A (SII), 3. (369 aa)
ENSSLDP00000021278ATPase family AAA domain containing 5b. (887 aa)
Your Current Organism:
Seriola lalandi
NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis
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