55 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSLDP00000003775	PHD-type domain-containing protein. (127 aa)
	mnat1	MNAT1 component of CDK activating kinase. (236 aa)
	polr2h	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	cdk7	Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
	LOC111652462	RB binding protein 4, chromatin remodeling factor. (424 aa)
	ENSSLDP00000003626	CHDCT2 domain-containing protein. (342 aa)
	ENSSLDP00000003688	Uncharacterized protein. (357 aa)
	ENSSLDP00000003741	Helicase ATP-binding domain-containing protein. (349 aa)
	mta2	Metastasis associated 1 family, member 2. (661 aa)
	twistnb	Uncharacterized protein. (380 aa)
	polr2k	Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
	LOC111669284	WD_REPEATS_REGION domain-containing protein. (427 aa)
	POLR1B	RNA polymerase I subunit B; Belongs to the RNA polymerase beta chain family. (516 aa)
	ercc6	Excision repair cross-complementation group 6. (1394 aa)
	znrd1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (118 aa)
	ENSSLDP00000020317	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (427 aa)
	ENSSLDP00000021689	Uncharacterized protein. (167 aa)
	LOC111655227	Metastasis associated 1 family, member 3. (515 aa)
	ccnh	Cyclin H; Belongs to the cyclin family. (319 aa)
	dmtf1	Cyclin D binding myb-like transcription factor 1. (603 aa)
	gtf2h3	General transcription factor IIH, polypeptide 3. (278 aa)
	polr1c	RNA polymerase I and III subunit C. (384 aa)
	LOC111652258	Uncharacterized protein. (571 aa)
	LOC111665667	Chromodomain helicase DNA binding protein 4a. (1883 aa)
	chd5	Uncharacterized protein. (1823 aa)
	gtf2h5	General transcription factor IIH, polypeptide 5. (91 aa)
	ercc2	Excision repair cross-complementation group 2. (760 aa)
	Polr1b	RNA_pol_Rpb2_1 domain-containing protein. (154 aa)
	mta1	Metastasis associated 1. (619 aa)
	taf1c	Wu:fj64h06. (971 aa)
	gtf2h1	General transcription factor IIH, polypeptide 1. (550 aa)
	ubtf	Upstream binding transcription factor. (737 aa)
	chd4	Uncharacterized protein. (1815 aa)
	polr2l	Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
	tbp	TATA box binding protein. (253 aa)
	LOC111653549	GATA zinc finger domain containing 2Ab. (652 aa)
	polr1a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1635 aa)
	taf1a	TATA box binding protein (TBP)-associated factor, RNA polymerase I, A. (428 aa)
	polr2f	Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
	polr1e	RNA polymerase I subunit E. (420 aa)
	LOC111662240	CD3e molecule, epsilon associated protein. (343 aa)
	ENSSLDP00000004562	RPA43_OB domain-containing protein. (311 aa)
	POLR2E	RNA polymerase II subunit E. (210 aa)
	ENSSLDP00000008454	PH_TFIIH domain-containing protein. (61 aa)
	LOC111659185	Upstream binding transcription factor, like. (514 aa)
	ttf1	Si:ch73-376l24.4. (568 aa)
	RBBP4	RB binding protein 4, chromatin remodeling factor. (425 aa)
	rrn3	RRN3 homolog, RNA polymerase I transcription factor. (612 aa)
	ercc3	Excision repair cross-complementation group 3. (803 aa)
	LOC111652018	Germ cell nuclear acidic peptidase. (613 aa)
	LOC111647896	General transcription factor IIH subunit. (392 aa)
	LOC111672857	TATA box binding protein like 2. (320 aa)
	LOC111652605	GATA zinc finger domain containing 2A. (736 aa)
	ENSSLDP00000015834	Autoimmune regulator. (338 aa)
	gatad2b	GATA zinc finger domain containing 2B. (565 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSLDP00000003626	ENSSLDP00000003688	ENSSLDP00000003626	ENSSLDP00000003688	CHDCT2 domain-containing protein.	Uncharacterized protein.	0.930
ENSSLDP00000003626	LOC111652462	ENSSLDP00000003626	ENSSLDP00000003429	CHDCT2 domain-containing protein.	RB binding protein 4, chromatin remodeling factor.	0.712
ENSSLDP00000003626	LOC111652605	ENSSLDP00000003626	ENSSLDP00000014226	CHDCT2 domain-containing protein.	GATA zinc finger domain containing 2A.	0.683
ENSSLDP00000003626	LOC111653549	ENSSLDP00000003626	ENSSLDP00000031429	CHDCT2 domain-containing protein.	GATA zinc finger domain containing 2Ab.	0.683
ENSSLDP00000003626	LOC111655227	ENSSLDP00000003626	ENSSLDP00000021932	CHDCT2 domain-containing protein.	Metastasis associated 1 family, member 3.	0.687
ENSSLDP00000003626	LOC111659185	ENSSLDP00000003626	ENSSLDP00000008993	CHDCT2 domain-containing protein.	Upstream binding transcription factor, like.	0.401
ENSSLDP00000003626	LOC111669284	ENSSLDP00000003626	ENSSLDP00000019301	CHDCT2 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.712
ENSSLDP00000003626	POLR1B	ENSSLDP00000003626	ENSSLDP00000019650	CHDCT2 domain-containing protein.	RNA polymerase I subunit B; Belongs to the RNA polymerase beta chain family.	0.442
ENSSLDP00000003626	POLR2E	ENSSLDP00000003626	ENSSLDP00000006238	CHDCT2 domain-containing protein.	RNA polymerase II subunit E.	0.507
ENSSLDP00000003626	Polr1b	ENSSLDP00000003626	ENSSLDP00000027270	CHDCT2 domain-containing protein.	RNA_pol_Rpb2_1 domain-containing protein.	0.442
ENSSLDP00000003626	RBBP4	ENSSLDP00000003626	ENSSLDP00000010254	CHDCT2 domain-containing protein.	RB binding protein 4, chromatin remodeling factor.	0.712
ENSSLDP00000003626	ercc3	ENSSLDP00000003626	ENSSLDP00000011009	CHDCT2 domain-containing protein.	Excision repair cross-complementation group 3.	0.478
ENSSLDP00000003626	ercc6	ENSSLDP00000003626	ENSSLDP00000019952	CHDCT2 domain-containing protein.	Excision repair cross-complementation group 6.	0.402
ENSSLDP00000003626	gatad2b	ENSSLDP00000003626	ENSSLDP00000016052	CHDCT2 domain-containing protein.	GATA zinc finger domain containing 2B.	0.683
ENSSLDP00000003626	mta1	ENSSLDP00000003626	ENSSLDP00000027504	CHDCT2 domain-containing protein.	Metastasis associated 1.	0.687
ENSSLDP00000003626	mta2	ENSSLDP00000003626	ENSSLDP00000016140	CHDCT2 domain-containing protein.	Metastasis associated 1 family, member 2.	0.687
ENSSLDP00000003626	polr1c	ENSSLDP00000003626	ENSSLDP00000023434	CHDCT2 domain-containing protein.	RNA polymerase I and III subunit C.	0.518
ENSSLDP00000003626	polr2f	ENSSLDP00000003626	ENSSLDP00000032416	CHDCT2 domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.649
ENSSLDP00000003626	polr2h	ENSSLDP00000003626	ENSSLDP00000002829	CHDCT2 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.502
ENSSLDP00000003626	polr2k	ENSSLDP00000003626	ENSSLDP00000017710	CHDCT2 domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide K.	0.502