STRINGSTRING
mnat1 mnat1 LOC111654238 LOC111654238 LOC111654239 LOC111654239 ENSSLDP00000000372 ENSSLDP00000000372 ENSSLDP00000000546 ENSSLDP00000000546 H3-3B H3-3B ENSSLDP00000002822 ENSSLDP00000002822 polr2h polr2h ENSSLDP00000002916 ENSSLDP00000002916 ENSSLDP00000003009 ENSSLDP00000003009 ENSSLDP00000003042 ENSSLDP00000003042 LOC111662848 LOC111662848 LOC111645287 LOC111645287 cdk7 cdk7 ENSSLDP00000003415 ENSSLDP00000003415 ENSSLDP00000003493 ENSSLDP00000003493 ENSSLDP00000003600 ENSSLDP00000003600 ENSSLDP00000003637 ENSSLDP00000003637 LOC111669083 LOC111669083 ENSSLDP00000003746 ENSSLDP00000003746 ENSSLDP00000003771 ENSSLDP00000003771 LOC111662240 LOC111662240 LOC111662848-2 LOC111662848-2 LOC111671172 LOC111671172 ENSSLDP00000004562 ENSSLDP00000004562 POLR2E POLR2E LOC111673325 LOC111673325 LOC111650369 LOC111650369 LOC111650432 LOC111650432 ENSSLDP00000008454 ENSSLDP00000008454 LOC111663521 LOC111663521 ENSSLDP00000008616 ENSSLDP00000008616 LOC111649104 LOC111649104 LOC111659185 LOC111659185 ENSSLDP00000009960 ENSSLDP00000009960 LOC111652548 LOC111652548 ENSSLDP00000010690 ENSSLDP00000010690 rrn3 rrn3 ercc3 ercc3 LOC111652018 LOC111652018 LOC111660901 LOC111660901 LOC111661033 LOC111661033 LOC111647896 LOC111647896 LOC111661474 LOC111661474 LOC111672857 LOC111672857 LOC111661744 LOC111661744 LOC111662044 LOC111662044 ENSSLDP00000016046 ENSSLDP00000016046 LOC111653925 LOC111653925 twistnb twistnb LOC111658654 LOC111658654 LOC111653258 LOC111653258 ENSSLDP00000017142 ENSSLDP00000017142 ENSSLDP00000017254 ENSSLDP00000017254 ENSSLDP00000017270 ENSSLDP00000017270 ENSSLDP00000017515 ENSSLDP00000017515 polr2k polr2k H2AZ1 H2AZ1 POLR1B POLR1B znrd1 znrd1 ENSSLDP00000020317 ENSSLDP00000020317 ENSSLDP00000021174 ENSSLDP00000021174 LOC111649529 LOC111649529 ENSSLDP00000021689 ENSSLDP00000021689 ccnh ccnh gtf2h3 gtf2h3 polr1c polr1c LOC111652258 LOC111652258 ENSSLDP00000024185 ENSSLDP00000024185 gtf2h5 gtf2h5 ercc2 ercc2 Polr1b Polr1b ENSSLDP00000028580 ENSSLDP00000028580 ENSSLDP00000028582 ENSSLDP00000028582 ENSSLDP00000028616 ENSSLDP00000028616 ENSSLDP00000028829 ENSSLDP00000028829 taf1c taf1c gtf2h1 gtf2h1 LOC111657222 LOC111657222 ENSSLDP00000029229 ENSSLDP00000029229 ENSSLDP00000029244 ENSSLDP00000029244 ENSSLDP00000029254 ENSSLDP00000029254 ENSSLDP00000029266 ENSSLDP00000029266 ENSSLDP00000029277 ENSSLDP00000029277 ENSSLDP00000029282 ENSSLDP00000029282 ENSSLDP00000029295 ENSSLDP00000029295 LOC111656245 LOC111656245 ENSSLDP00000029429 ENSSLDP00000029429 LOC111650301 LOC111650301 ENSSLDP00000029476 ENSSLDP00000029476 ENSSLDP00000029498 ENSSLDP00000029498 ENSSLDP00000029509 ENSSLDP00000029509 LOC111650310 LOC111650310 tbpl1 tbpl1 ubtf ubtf LOC111651692 LOC111651692 polr2l polr2l tbp tbp polr1a polr1a taf1a taf1a polr2f polr2f polr1e polr1e LOC111660880 LOC111660880
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
mnat1MNAT1 component of CDK activating kinase. (236 aa)
LOC111654238Histone H3; Belongs to the histone H3 family. (136 aa)
LOC111654239Histone H3.3. (136 aa)
ENSSLDP00000000372Histone H2A; Belongs to the histone H2A family. (130 aa)
ENSSLDP00000000546Uncharacterized protein; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (61 aa)
H3-3BHistone H3.3. (136 aa)
ENSSLDP00000002822Histone H2A; Belongs to the histone H2A family. (130 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
ENSSLDP00000002916Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (93 aa)
ENSSLDP00000003009Histone H2A; Belongs to the histone H2A family. (137 aa)
ENSSLDP00000003042Histone H2B; Belongs to the histone H2B family. (120 aa)
LOC111662848Histone H2A; Belongs to the histone H2A family. (139 aa)
LOC111645287Histone H2A. (112 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
ENSSLDP00000003415Histone H3; Belongs to the histone H3 family. (131 aa)
ENSSLDP00000003493Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (95 aa)
ENSSLDP00000003600Histone H2A; Belongs to the histone H2A family. (99 aa)
ENSSLDP00000003637Histone domain-containing protein. (105 aa)
LOC111669083Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (96 aa)
ENSSLDP00000003746Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (97 aa)
ENSSLDP00000003771Histone domain-containing protein. (168 aa)
LOC111662240CD3e molecule, epsilon associated protein. (343 aa)
LOC111662848-2Histone H2A; Belongs to the histone H2A family. (139 aa)
LOC111671172Histone domain-containing protein; Belongs to the histone H2B family. (95 aa)
ENSSLDP00000004562RPA43_OB domain-containing protein. (311 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
LOC111673325Chromobox homolog 3a (HP1 gamma homolog, Drosophila). (174 aa)
LOC111650369Histone H2B; Belongs to the histone H2B family. (67 aa)
LOC111650432Histone H2B; Belongs to the histone H2B family. (120 aa)
ENSSLDP00000008454PH_TFIIH domain-containing protein. (61 aa)
LOC111663521Histone H3.3. (136 aa)
ENSSLDP00000008616Histone H3; Belongs to the histone H3 family. (92 aa)
LOC111649104Histone H2B; Belongs to the histone H2B family. (123 aa)
LOC111659185Upstream binding transcription factor, like. (514 aa)
ENSSLDP00000009960Histone H3; Belongs to the histone H3 family. (140 aa)
LOC111652548Histone H2B 7-like. (67 aa)
ENSSLDP00000010690Histone H2A; Belongs to the histone H2A family. (143 aa)
rrn3RRN3 homolog, RNA polymerase I transcription factor. (612 aa)
ercc3Excision repair cross-complementation group 3. (803 aa)
LOC111652018Germ cell nuclear acidic peptidase. (613 aa)
LOC111660901Histone H4-like. (71 aa)
LOC111661033Histone domain-containing protein. (109 aa)
LOC111647896General transcription factor IIH subunit. (392 aa)
LOC111661474Histone H2B. (67 aa)
LOC111672857TATA box binding protein like 2. (320 aa)
LOC111661744Histone domain-containing protein; Belongs to the histone H2B family. (105 aa)
LOC111662044Histone H4-like. (71 aa)
ENSSLDP00000016046Histone H2B; Belongs to the histone H2B family. (114 aa)
LOC111653925Histone H2A; Belongs to the histone H2A family. (140 aa)
twistnbUncharacterized protein. (380 aa)
LOC111658654Histone H3.3. (136 aa)
LOC111653258Histone H2B; Belongs to the histone H2B family. (116 aa)
ENSSLDP00000017142annotation not available (95 aa)
ENSSLDP00000017254Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (93 aa)
ENSSLDP00000017270Histone H2A; Belongs to the histone H2A family. (130 aa)
ENSSLDP00000017515Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (88 aa)
polr2kPolymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
H2AZ1Histone H2A; Belongs to the histone H2A family. (128 aa)
POLR1BRNA polymerase I subunit B; Belongs to the RNA polymerase beta chain family. (516 aa)
znrd1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (118 aa)
ENSSLDP00000020317General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (427 aa)
ENSSLDP00000021174Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (144 aa)
LOC111649529Histone H2B; Belongs to the histone H2B family. (140 aa)
ENSSLDP00000021689Uncharacterized protein. (167 aa)
ccnhCyclin H; Belongs to the cyclin family. (319 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (278 aa)
polr1cRNA polymerase I and III subunit C. (384 aa)
LOC111652258Uncharacterized protein. (571 aa)
ENSSLDP00000024185Histone H2A; Belongs to the histone H2A family. (141 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (91 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
Polr1bRNA_pol_Rpb2_1 domain-containing protein. (154 aa)
ENSSLDP00000028580Histone H2A; Belongs to the histone H2A family. (116 aa)
ENSSLDP00000028582Histone H2A; Belongs to the histone H2A family. (129 aa)
ENSSLDP00000028616Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (102 aa)
ENSSLDP00000028829Histone H2B; Belongs to the histone H2B family. (63 aa)
taf1cWu:fj64h06. (971 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
LOC111657222Histone H2B 1/2. (124 aa)
ENSSLDP00000029229Histone H3; Belongs to the histone H3 family. (106 aa)
ENSSLDP00000029244Histone domain-containing protein; Belongs to the histone H2B family. (130 aa)
ENSSLDP00000029254Histone H2A; Belongs to the histone H2A family. (141 aa)
ENSSLDP00000029266Histone H2A; Belongs to the histone H2A family. (253 aa)
ENSSLDP00000029277Histone H2A; Belongs to the histone H2A family. (129 aa)
ENSSLDP00000029282Histone domain-containing protein. (196 aa)
ENSSLDP00000029295Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (98 aa)
LOC111656245Histone H2B; Belongs to the histone H2B family. (124 aa)
ENSSLDP00000029429Histone H3; Belongs to the histone H3 family. (101 aa)
LOC111650301Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
ENSSLDP00000029476Histone domain-containing protein; Belongs to the histone H2B family. (110 aa)
ENSSLDP00000029498Histone H2A; Belongs to the histone H2A family. (158 aa)
ENSSLDP00000029509Histone H2B; Belongs to the histone H2B family. (63 aa)
LOC111650310Histone H2B 1/2-like. (123 aa)
tbpl1TBP-like 1. (187 aa)
ubtfUpstream binding transcription factor. (737 aa)
LOC111651692Histone domain-containing protein. (131 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
tbpTATA box binding protein. (253 aa)
polr1aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1635 aa)
taf1aTATA box binding protein (TBP)-associated factor, RNA polymerase I, A. (428 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
polr1eRNA polymerase I subunit E. (420 aa)
LOC111660880Histone H2A; Belongs to the histone H2A family. (128 aa)
Your Current Organism:
Seriola lalandi
NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis
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