37 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gtf2h5	General transcription factor IIH, polypeptide 5. (91 aa)
	polr1e	RNA polymerase I subunit E. (420 aa)
	polr2f	Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
	taf1a	TATA box binding protein (TBP)-associated factor, RNA polymerase I, A. (428 aa)
	polr1a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1635 aa)
	tbp	TATA box binding protein. (253 aa)
	polr2l	Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
	ubtf	Upstream binding transcription factor. (737 aa)
	gtf2h1	General transcription factor IIH, polypeptide 1. (550 aa)
	taf1c	Wu:fj64h06. (971 aa)
	Polr1b	RNA_pol_Rpb2_1 domain-containing protein. (154 aa)
	ercc2	Excision repair cross-complementation group 2. (760 aa)
	polr1c	RNA polymerase I and III subunit C. (384 aa)
	gtf2h3	General transcription factor IIH, polypeptide 3. (278 aa)
	ccnh	Cyclin H; Belongs to the cyclin family. (319 aa)
	ENSSLDP00000021689	Uncharacterized protein. (167 aa)
	ENSSLDP00000020317	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (427 aa)
	LOC111664400	Caveolae associated protein 1b. (468 aa)
	znrd1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (118 aa)
	POLR1B	RNA polymerase I subunit B; Belongs to the RNA polymerase beta chain family. (516 aa)
	polr2k	Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
	twistnb	Uncharacterized protein. (380 aa)
	ENSSLDP00000015128	Uncharacterized protein. (175 aa)
	LOC111672857	TATA box binding protein like 2. (320 aa)
	LOC111647896	General transcription factor IIH subunit. (392 aa)
	ercc3	Excision repair cross-complementation group 3. (803 aa)
	Cavin1	Caveolae associated protein 1a. (177 aa)
	ttf1	Si:ch73-376l24.4. (568 aa)
	LOC111659185	Upstream binding transcription factor, like. (514 aa)
	ENSSLDP00000008454	PH_TFIIH domain-containing protein. (61 aa)
	POLR2E	RNA polymerase II subunit E. (210 aa)
	ENSSLDP00000004562	RPA43_OB domain-containing protein. (311 aa)
	LOC111662240	CD3e molecule, epsilon associated protein. (343 aa)
	ENSSLDP00000003641	Uncharacterized protein. (166 aa)
	cdk7	Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
	polr2h	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	mnat1	MNAT1 component of CDK activating kinase. (236 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cavin1	ENSSLDP00000003641	ENSSLDP00000010200	ENSSLDP00000003641	Caveolae associated protein 1a.	Uncharacterized protein.	0.914
Cavin1	ENSSLDP00000015128	ENSSLDP00000010200	ENSSLDP00000015128	Caveolae associated protein 1a.	Uncharacterized protein.	0.787
Cavin1	ttf1	ENSSLDP00000010200	ENSSLDP00000009505	Caveolae associated protein 1a.	Si:ch73-376l24.4.	0.566
ENSSLDP00000003641	Cavin1	ENSSLDP00000003641	ENSSLDP00000010200	Uncharacterized protein.	Caveolae associated protein 1a.	0.914
ENSSLDP00000003641	ttf1	ENSSLDP00000003641	ENSSLDP00000009505	Uncharacterized protein.	Si:ch73-376l24.4.	0.566
ENSSLDP00000004562	ENSSLDP00000021689	ENSSLDP00000004562	ENSSLDP00000021689	RPA43_OB domain-containing protein.	Uncharacterized protein.	0.606
ENSSLDP00000004562	LOC111647896	ENSSLDP00000004562	ENSSLDP00000013095	RPA43_OB domain-containing protein.	General transcription factor IIH subunit.	0.707
ENSSLDP00000004562	LOC111659185	ENSSLDP00000004562	ENSSLDP00000008993	RPA43_OB domain-containing protein.	Upstream binding transcription factor, like.	0.529
ENSSLDP00000004562	LOC111662240	ENSSLDP00000004562	ENSSLDP00000003997	RPA43_OB domain-containing protein.	CD3e molecule, epsilon associated protein.	0.989
ENSSLDP00000004562	LOC111672857	ENSSLDP00000004562	ENSSLDP00000013490	RPA43_OB domain-containing protein.	TATA box binding protein like 2.	0.606
ENSSLDP00000004562	POLR1B	ENSSLDP00000004562	ENSSLDP00000019650	RPA43_OB domain-containing protein.	RNA polymerase I subunit B; Belongs to the RNA polymerase beta chain family.	0.973
ENSSLDP00000004562	POLR2E	ENSSLDP00000004562	ENSSLDP00000006238	RPA43_OB domain-containing protein.	RNA polymerase II subunit E.	0.986
ENSSLDP00000004562	Polr1b	ENSSLDP00000004562	ENSSLDP00000027270	RPA43_OB domain-containing protein.	RNA_pol_Rpb2_1 domain-containing protein.	0.973
ENSSLDP00000004562	ercc2	ENSSLDP00000004562	ENSSLDP00000026237	RPA43_OB domain-containing protein.	Excision repair cross-complementation group 2.	0.638
ENSSLDP00000004562	gtf2h5	ENSSLDP00000004562	ENSSLDP00000025806	RPA43_OB domain-containing protein.	General transcription factor IIH, polypeptide 5.	0.610
ENSSLDP00000004562	polr1a	ENSSLDP00000004562	ENSSLDP00000031517	RPA43_OB domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.986
ENSSLDP00000004562	polr1c	ENSSLDP00000004562	ENSSLDP00000023434	RPA43_OB domain-containing protein.	RNA polymerase I and III subunit C.	0.993
ENSSLDP00000004562	polr1e	ENSSLDP00000004562	ENSSLDP00000032454	RPA43_OB domain-containing protein.	RNA polymerase I subunit E.	0.994
ENSSLDP00000004562	polr2f	ENSSLDP00000004562	ENSSLDP00000032416	RPA43_OB domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.977
ENSSLDP00000004562	polr2h	ENSSLDP00000004562	ENSSLDP00000002829	RPA43_OB domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.978