32 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	polr3a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1402 aa)
	polr2f	Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
	tbp	TATA box binding protein. (253 aa)
	polr2l	Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
	tbpl1	TBP-like 1. (187 aa)
	polr3b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1132 aa)
	ENSSLDP00000029588	Uncharacterized protein. (110 aa)
	polr3g	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (212 aa)
	LOC111668259	Si:dkey-208k4.2. (370 aa)
	gtf3c6	TFIIIC_sub6 domain-containing protein. (153 aa)
	polr1c	RNA polymerase I and III subunit C. (384 aa)
	polr3h	Polymerase (RNA) III (DNA directed) polypeptide H. (215 aa)
	polr3e	Polymerase (RNA) III (DNA directed) polypeptide E. (699 aa)
	ENSSLDP00000021689	Uncharacterized protein. (167 aa)
	crcp	Calcitonin gene-related peptide-receptor component protein. (147 aa)
	LOC111664401	Zgc:171971. (404 aa)
	polr3c	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (566 aa)
	LOC111668070	SANT domain-containing protein. (2591 aa)
	polr2k	Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
	LOC111659884	BRF1 RNA polymerase III transcription initiation factor subunit. (697 aa)
	gtf3c5	General transcription factor IIIC, polypeptide 5. (531 aa)
	gtf3c4	General transcription factor IIIC, polypeptide 4. (776 aa)
	gtf3c3	General transcription factor IIIC, polypeptide 3. (821 aa)
	polr3f	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (316 aa)
	polr3k	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
	LOC111672857	TATA box binding protein like 2. (320 aa)
	polr3d	Polymerase (RNA) III (DNA directed) polypeptide D. (387 aa)
	GTF3C1	General transcription factor IIIC subunit 1. (1752 aa)
	gtf3c2	General transcription factor IIIC, polypeptide 2, beta. (959 aa)
	POLR2E	RNA polymerase II subunit E. (210 aa)
	polr2h	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	ENSSLDP00000000573	BRF1 RNA polymerase III transcription initiation factor subunit b. (728 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSLDP00000000573	ENSSLDP00000021689	ENSSLDP00000000573	ENSSLDP00000021689	BRF1 RNA polymerase III transcription initiation factor subunit b.	Uncharacterized protein.	0.923
ENSSLDP00000000573	ENSSLDP00000029588	ENSSLDP00000000573	ENSSLDP00000029588	BRF1 RNA polymerase III transcription initiation factor subunit b.	Uncharacterized protein.	0.816
ENSSLDP00000000573	GTF3C1	ENSSLDP00000000573	ENSSLDP00000009864	BRF1 RNA polymerase III transcription initiation factor subunit b.	General transcription factor IIIC subunit 1.	0.884
ENSSLDP00000000573	LOC111664401	ENSSLDP00000000573	ENSSLDP00000020399	BRF1 RNA polymerase III transcription initiation factor subunit b.	Zgc:171971.	0.832
ENSSLDP00000000573	LOC111668070	ENSSLDP00000000573	ENSSLDP00000018793	BRF1 RNA polymerase III transcription initiation factor subunit b.	SANT domain-containing protein.	0.974
ENSSLDP00000000573	LOC111668259	ENSSLDP00000000573	ENSSLDP00000026774	BRF1 RNA polymerase III transcription initiation factor subunit b.	Si:dkey-208k4.2.	0.687
ENSSLDP00000000573	LOC111672857	ENSSLDP00000000573	ENSSLDP00000013490	BRF1 RNA polymerase III transcription initiation factor subunit b.	TATA box binding protein like 2.	0.923
ENSSLDP00000000573	POLR2E	ENSSLDP00000000573	ENSSLDP00000006238	BRF1 RNA polymerase III transcription initiation factor subunit b.	RNA polymerase II subunit E.	0.848
ENSSLDP00000000573	crcp	ENSSLDP00000000573	ENSSLDP00000020941	BRF1 RNA polymerase III transcription initiation factor subunit b.	Calcitonin gene-related peptide-receptor component protein.	0.931
ENSSLDP00000000573	gtf3c2	ENSSLDP00000000573	ENSSLDP00000009628	BRF1 RNA polymerase III transcription initiation factor subunit b.	General transcription factor IIIC, polypeptide 2, beta.	0.554
ENSSLDP00000000573	gtf3c3	ENSSLDP00000000573	ENSSLDP00000017008	BRF1 RNA polymerase III transcription initiation factor subunit b.	General transcription factor IIIC, polypeptide 3.	0.976
ENSSLDP00000000573	gtf3c4	ENSSLDP00000000573	ENSSLDP00000017438	BRF1 RNA polymerase III transcription initiation factor subunit b.	General transcription factor IIIC, polypeptide 4.	0.830
ENSSLDP00000000573	gtf3c5	ENSSLDP00000000573	ENSSLDP00000017554	BRF1 RNA polymerase III transcription initiation factor subunit b.	General transcription factor IIIC, polypeptide 5.	0.870
ENSSLDP00000000573	polr1c	ENSSLDP00000000573	ENSSLDP00000023434	BRF1 RNA polymerase III transcription initiation factor subunit b.	RNA polymerase I and III subunit C.	0.936
ENSSLDP00000000573	polr2f	ENSSLDP00000000573	ENSSLDP00000032416	BRF1 RNA polymerase III transcription initiation factor subunit b.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.887
ENSSLDP00000000573	polr2h	ENSSLDP00000000573	ENSSLDP00000002829	BRF1 RNA polymerase III transcription initiation factor subunit b.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.877
ENSSLDP00000000573	polr2k	ENSSLDP00000000573	ENSSLDP00000017710	BRF1 RNA polymerase III transcription initiation factor subunit b.	Polymerase (RNA) II (DNA directed) polypeptide K.	0.940
ENSSLDP00000000573	polr2l	ENSSLDP00000000573	ENSSLDP00000031267	BRF1 RNA polymerase III transcription initiation factor subunit b.	Polymerase (RNA) II (DNA directed) polypeptide L.	0.839
ENSSLDP00000000573	polr3a	ENSSLDP00000000573	ENSSLDP00000031164	BRF1 RNA polymerase III transcription initiation factor subunit b.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.962
ENSSLDP00000000573	polr3b	ENSSLDP00000000573	ENSSLDP00000029674	BRF1 RNA polymerase III transcription initiation factor subunit b.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.963