30 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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protein homology

Your Input:
	polr3a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1402 aa)
	polr2f	Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
	tbp	TATA box binding protein. (253 aa)
	polr2l	Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
	snapc5	Small nuclear RNA activating complex, polypeptide 5. (119 aa)
	snapc3	Small nuclear RNA activating complex, polypeptide 3. (382 aa)
	polr3b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1132 aa)
	ENSSLDP00000029588	Uncharacterized protein. (110 aa)
	LOC111644645	Uncharacterized protein. (361 aa)
	polr3g	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (212 aa)
	pou2f1	POU domain protein. (683 aa)
	polr1c	RNA polymerase I and III subunit C. (384 aa)
	polr3h	Polymerase (RNA) III (DNA directed) polypeptide H. (215 aa)
	polr3e	Polymerase (RNA) III (DNA directed) polypeptide E. (699 aa)
	LOC111665022	Uncharacterized protein. (1041 aa)
	ENSSLDP00000021689	Uncharacterized protein. (167 aa)
	crcp	Calcitonin gene-related peptide-receptor component protein. (147 aa)
	brf2	BRF2 RNA polymerase III transcription initiation factor subunit. (451 aa)
	polr3c	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (566 aa)
	LOC111668070	SANT domain-containing protein. (2591 aa)
	polr2k	Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
	polr3f	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (316 aa)
	polr3k	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
	LOC111672857	TATA box binding protein like 2. (320 aa)
	polr3d	Polymerase (RNA) III (DNA directed) polypeptide D. (387 aa)
	znf143	Zinc finger protein 143b. (626 aa)
	ENSSLDP00000007653	Uncharacterized protein. (319 aa)
	POLR2E	RNA polymerase II subunit E. (210 aa)
	snapc1	Small nuclear RNA activating complex, polypeptide 1b. (353 aa)
	polr2h	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSLDP00000007653	LOC111665022	ENSSLDP00000007653	ENSSLDP00000021945	Uncharacterized protein.	Uncharacterized protein.	0.694
ENSSLDP00000021689	ENSSLDP00000029588	ENSSLDP00000021689	ENSSLDP00000029588	Uncharacterized protein.	Uncharacterized protein.	0.757
ENSSLDP00000021689	LOC111644645	ENSSLDP00000021689	ENSSLDP00000028244	Uncharacterized protein.	Uncharacterized protein.	0.784
ENSSLDP00000021689	LOC111665022	ENSSLDP00000021689	ENSSLDP00000021945	Uncharacterized protein.	Uncharacterized protein.	0.842
ENSSLDP00000021689	LOC111668070	ENSSLDP00000021689	ENSSLDP00000018793	Uncharacterized protein.	SANT domain-containing protein.	0.964
ENSSLDP00000021689	POLR2E	ENSSLDP00000021689	ENSSLDP00000006238	Uncharacterized protein.	RNA polymerase II subunit E.	0.956
ENSSLDP00000021689	brf2	ENSSLDP00000021689	ENSSLDP00000020324	Uncharacterized protein.	BRF2 RNA polymerase III transcription initiation factor subunit.	0.880
ENSSLDP00000021689	crcp	ENSSLDP00000021689	ENSSLDP00000020941	Uncharacterized protein.	Calcitonin gene-related peptide-receptor component protein.	0.828
ENSSLDP00000021689	polr1c	ENSSLDP00000021689	ENSSLDP00000023434	Uncharacterized protein.	RNA polymerase I and III subunit C.	0.880
ENSSLDP00000021689	polr2f	ENSSLDP00000021689	ENSSLDP00000032416	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.946
ENSSLDP00000021689	polr2h	ENSSLDP00000021689	ENSSLDP00000002829	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.942
ENSSLDP00000021689	polr2k	ENSSLDP00000021689	ENSSLDP00000017710	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide K.	0.939
ENSSLDP00000021689	polr2l	ENSSLDP00000021689	ENSSLDP00000031267	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide L.	0.948
ENSSLDP00000021689	polr3a	ENSSLDP00000021689	ENSSLDP00000031164	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.879
ENSSLDP00000021689	polr3b	ENSSLDP00000021689	ENSSLDP00000029674	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.857
ENSSLDP00000021689	polr3c	ENSSLDP00000021689	ENSSLDP00000019959	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.877
ENSSLDP00000021689	polr3d	ENSSLDP00000021689	ENSSLDP00000012117	Uncharacterized protein.	Polymerase (RNA) III (DNA directed) polypeptide D.	0.883
ENSSLDP00000021689	polr3e	ENSSLDP00000021689	ENSSLDP00000022021	Uncharacterized protein.	Polymerase (RNA) III (DNA directed) polypeptide E.	0.817
ENSSLDP00000021689	polr3f	ENSSLDP00000021689	ENSSLDP00000016088	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.900
ENSSLDP00000021689	polr3g	ENSSLDP00000021689	ENSSLDP00000027122	Uncharacterized protein.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.757