32 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	wdr47	WD repeat domain 47a. (914 aa)
	LOC111662067	Transducin beta like 1 X-linked. (480 aa)
	ENSSLDP00000000819	LisH domain-containing protein. (148 aa)
	LOC111651777	GID complex subunit 8 homolog b (S. cerevisiae). (228 aa)
	TBL1XR1	Transducin beta like 1 X-linked receptor 1. (550 aa)
	ranbp9	RAN binding protein 9. (588 aa)
	ENSSLDP00000002003	LisH domain-containing protein. (338 aa)
	armc9	Armadillo repeat containing 9. (846 aa)
	ENSSLDP00000004232	LisH domain-containing protein. (480 aa)
	ssbp2	Si:ch211-130m23.3. (373 aa)
	SMU1	SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
	DCAF1	DDB1 and CUL4 associated factor 1. (1555 aa)
	fopnl	Fgfr1op N-terminal like. (146 aa)
	taf5	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (750 aa)
	relch	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing. (1192 aa)
	LOC111664153	WD repeat domain 26a. (613 aa)
	rmnd5b	Required for meiotic nuclear division 5 homolog B. (391 aa)
	LOC111672865	LisH domain-containing protein. (1542 aa)
	LOC111661887	Uncharacterized protein. (229 aa)
	mkln1	Muskelin 1, intracellular mediator containing kelch motifs. (742 aa)
	ranbp10	RAN binding protein 10. (593 aa)
	LOC111661257	Transducin (beta)-like 1 X-linked receptor 1b. (513 aa)
	LOC111647464	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family. (410 aa)
	LOC111656382	Single stranded DNA binding protein 3b. (383 aa)
	ENSSLDP00000022497	LisH domain-containing protein. (217 aa)
	SSBP4	Single stranded DNA binding protein 4. (385 aa)
	PAFAH1B1	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family. (410 aa)
	fgfr1op	FGFR1 oncogene partner. (501 aa)
	LOC111658985	Nucleolar and coiled-body phosphoprotein 1. (978 aa)
	maea	Macrophage erythroblast attacher. (396 aa)
	LOC111669975	WD repeat domain 47b. (890 aa)
	LOC111672595	WD repeat domain 26b. (609 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSLDP00000000819	fopnl	ENSSLDP00000000819	ENSSLDP00000011442	LisH domain-containing protein.	Fgfr1op N-terminal like.	0.529
LOC111647464	PAFAH1B1	ENSSLDP00000019958	ENSSLDP00000027223	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	0.900
LOC111651777	LOC111664153	ENSSLDP00000001038	ENSSLDP00000013576	GID complex subunit 8 homolog b (S. cerevisiae).	WD repeat domain 26a.	0.874
LOC111651777	LOC111672595	ENSSLDP00000001038	ENSSLDP00000033181	GID complex subunit 8 homolog b (S. cerevisiae).	WD repeat domain 26b.	0.874
LOC111651777	maea	ENSSLDP00000001038	ENSSLDP00000032125	GID complex subunit 8 homolog b (S. cerevisiae).	Macrophage erythroblast attacher.	0.765
LOC111651777	mkln1	ENSSLDP00000001038	ENSSLDP00000017556	GID complex subunit 8 homolog b (S. cerevisiae).	Muskelin 1, intracellular mediator containing kelch motifs.	0.736
LOC111651777	ranbp10	ENSSLDP00000001038	ENSSLDP00000017593	GID complex subunit 8 homolog b (S. cerevisiae).	RAN binding protein 10.	0.881
LOC111651777	ranbp9	ENSSLDP00000001038	ENSSLDP00000001592	GID complex subunit 8 homolog b (S. cerevisiae).	RAN binding protein 9.	0.881
LOC111651777	rmnd5b	ENSSLDP00000001038	ENSSLDP00000013636	GID complex subunit 8 homolog b (S. cerevisiae).	Required for meiotic nuclear division 5 homolog B.	0.932
LOC111658985	mkln1	ENSSLDP00000030118	ENSSLDP00000017556	Nucleolar and coiled-body phosphoprotein 1.	Muskelin 1, intracellular mediator containing kelch motifs.	0.437
LOC111661257	LOC111662067	ENSSLDP00000019356	ENSSLDP00000000144	Transducin (beta)-like 1 X-linked receptor 1b.	Transducin beta like 1 X-linked.	0.421
LOC111661257	TBL1XR1	ENSSLDP00000019356	ENSSLDP00000001257	Transducin (beta)-like 1 X-linked receptor 1b.	Transducin beta like 1 X-linked receptor 1.	0.900
LOC111661887	LOC111664153	ENSSLDP00000016205	ENSSLDP00000013576	Uncharacterized protein.	WD repeat domain 26a.	0.874
LOC111661887	LOC111672595	ENSSLDP00000016205	ENSSLDP00000033181	Uncharacterized protein.	WD repeat domain 26b.	0.874
LOC111661887	maea	ENSSLDP00000016205	ENSSLDP00000032125	Uncharacterized protein.	Macrophage erythroblast attacher.	0.765
LOC111661887	mkln1	ENSSLDP00000016205	ENSSLDP00000017556	Uncharacterized protein.	Muskelin 1, intracellular mediator containing kelch motifs.	0.736
LOC111661887	ranbp10	ENSSLDP00000016205	ENSSLDP00000017593	Uncharacterized protein.	RAN binding protein 10.	0.881
LOC111661887	ranbp9	ENSSLDP00000016205	ENSSLDP00000001592	Uncharacterized protein.	RAN binding protein 9.	0.881
LOC111661887	rmnd5b	ENSSLDP00000016205	ENSSLDP00000013636	Uncharacterized protein.	Required for meiotic nuclear division 5 homolog B.	0.932
LOC111662067	LOC111661257	ENSSLDP00000000144	ENSSLDP00000019356	Transducin beta like 1 X-linked.	Transducin (beta)-like 1 X-linked receptor 1b.	0.421