41 items (Seriola lalandi) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	LOC111655428	Protein kinase domain-containing protein. (762 aa)
	polr2h	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	LOC111647794	SCY domain-containing protein. (99 aa)
	ENSSLDP00000003803	Uncharacterized protein. (94 aa)
	LOC111672507	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (308 aa)
	POLR2E	RNA polymerase II subunit E. (210 aa)
	ENSSLDP00000006679	Mab-21 domain-containing protein. (280 aa)
	LOC111659317	Uncharacterized protein. (239 aa)
	LOC111661685	Receptor-interacting serine-threonine kinase 3. (512 aa)
	mavs	CARD_2 domain-containing protein. (525 aa)
	ikbkb	Inhibitor of nuclear factor kappa B kinase subunit beta. (773 aa)
	polr3d	Polymerase (RNA) III (DNA directed) polypeptide D. (387 aa)
	LOC111658714	Interferon regulatory factor 3. (465 aa)
	polr3k	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
	LOC111647875	SCY domain-containing protein. (119 aa)
	irf7	Interferon regulatory factor 7. (438 aa)
	polr3f	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (316 aa)
	polr2k	Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
	adar	Adenosine deaminase RNA specific. (1387 aa)
	ikbkg	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma. (598 aa)
	polr3c	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (566 aa)
	LOC111664401	Zgc:171971. (404 aa)
	LOC111658207	Component of inhibitor of nuclear factor kappa B kinase complex. (734 aa)
	polr3e	Polymerase (RNA) III (DNA directed) polypeptide E. (699 aa)
	rela	V-rel avian reticuloendotheliosis viral oncogene homolog A. (632 aa)
	polr3h	Polymerase (RNA) III (DNA directed) polypeptide H. (215 aa)
	polr1c	RNA polymerase I and III subunit C. (384 aa)
	ripk1	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like. (682 aa)
	tbk1	TANK-binding kinase 1. (723 aa)
	polr3g	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (212 aa)
	LOC111650292	SCY domain-containing protein. (119 aa)
	ENSSLDP00000029588	Uncharacterized protein. (110 aa)
	polr3b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1132 aa)
	sting1	Transmembrane protein 173. (414 aa)
	nfkbia	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b. (318 aa)
	LOC111646446	RNA polymerase I and III subunit D. (118 aa)
	polr3a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1402 aa)
	polr2l	Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
	polr2f	Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
	LOC111660942	Interleukin-1. (264 aa)
	LOC111660964	Interleukin-1. (250 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSLDP00000003803	LOC111647794	ENSSLDP00000003803	ENSSLDP00000003663	Uncharacterized protein.	SCY domain-containing protein.	0.903
ENSSLDP00000006679	sting1	ENSSLDP00000006679	ENSSLDP00000030381	Mab-21 domain-containing protein.	Transmembrane protein 173.	0.473
ENSSLDP00000029588	LOC111646446	ENSSLDP00000029588	ENSSLDP00000031035	Uncharacterized protein.	RNA polymerase I and III subunit D.	0.979
ENSSLDP00000029588	LOC111664401	ENSSLDP00000029588	ENSSLDP00000020399	Uncharacterized protein.	Zgc:171971.	0.953
ENSSLDP00000029588	POLR2E	ENSSLDP00000029588	ENSSLDP00000006238	Uncharacterized protein.	RNA polymerase II subunit E.	0.974
ENSSLDP00000029588	polr1c	ENSSLDP00000029588	ENSSLDP00000023434	Uncharacterized protein.	RNA polymerase I and III subunit C.	0.981
ENSSLDP00000029588	polr2f	ENSSLDP00000029588	ENSSLDP00000032416	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.970
ENSSLDP00000029588	polr2h	ENSSLDP00000029588	ENSSLDP00000002829	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.977
ENSSLDP00000029588	polr2k	ENSSLDP00000029588	ENSSLDP00000017710	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide K.	0.961
ENSSLDP00000029588	polr2l	ENSSLDP00000029588	ENSSLDP00000031267	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide L.	0.964
ENSSLDP00000029588	polr3a	ENSSLDP00000029588	ENSSLDP00000031164	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.979
ENSSLDP00000029588	polr3b	ENSSLDP00000029588	ENSSLDP00000029674	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.978
ENSSLDP00000029588	polr3c	ENSSLDP00000029588	ENSSLDP00000019959	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.979
ENSSLDP00000029588	polr3d	ENSSLDP00000029588	ENSSLDP00000012117	Uncharacterized protein.	Polymerase (RNA) III (DNA directed) polypeptide D.	0.963
ENSSLDP00000029588	polr3e	ENSSLDP00000029588	ENSSLDP00000022021	Uncharacterized protein.	Polymerase (RNA) III (DNA directed) polypeptide E.	0.978
ENSSLDP00000029588	polr3f	ENSSLDP00000029588	ENSSLDP00000016088	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.983
ENSSLDP00000029588	polr3g	ENSSLDP00000029588	ENSSLDP00000027122	Uncharacterized protein.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.900
ENSSLDP00000029588	polr3h	ENSSLDP00000029588	ENSSLDP00000023331	Uncharacterized protein.	Polymerase (RNA) III (DNA directed) polypeptide H.	0.979
ENSSLDP00000029588	polr3k	ENSSLDP00000029588	ENSSLDP00000013681	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.975
LOC111646446	ENSSLDP00000029588	ENSSLDP00000031035	ENSSLDP00000029588	RNA polymerase I and III subunit D.	Uncharacterized protein.	0.979