(11 nodes) Citrate cycle (TCA cycle) network (Pelobacter sp. SFB93)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APG29001.1	2-oxoacid:ferredoxin oxidoreductase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa)
	APG29002.1	2-oxoglutarate oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	APG26921.1	3-methyl-2-oxobutanoate dehydrogenase subunit VorB; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)
	APG26922.1	2-oxoacid:acceptor oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (73 aa)
	APG27417.1	Tungsten formylmethanofuran dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (61 aa)
	APG27418.1	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
	APG27419.1	2-oxoacid:ferredoxin oxidoreductase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	APG27420.1	2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Catalyzes the ferredoxin-dependent oxidative decarboxylation 2-oxoglutarate forming succinyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)
	APG27436.1	Dihydrolipoyl dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
	APG27879.1	Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1194 aa)
	A7E78_12310	2-oxoglutarate dehydrogenase E1 component; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)

Your Current Organism:

Pelobacter sp. SFB93

NCBI taxonomy Id: 1842532
Other names: P. sp. SFB93

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A7E78_12310	APG26921.1	A7E78_12310	A7E78_03160	2-oxoglutarate dehydrogenase E1 component; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-methyl-2-oxobutanoate dehydrogenase subunit VorB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
A7E78_12310	APG26922.1	A7E78_12310	A7E78_03165	2-oxoglutarate dehydrogenase E1 component; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoacid:acceptor oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
A7E78_12310	APG27417.1	A7E78_12310	A7E78_05915	2-oxoglutarate dehydrogenase E1 component; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tungsten formylmethanofuran dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
A7E78_12310	APG27418.1	A7E78_12310	A7E78_05920	2-oxoglutarate dehydrogenase E1 component; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
A7E78_12310	APG27419.1	A7E78_12310	A7E78_05925	2-oxoglutarate dehydrogenase E1 component; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoacid:ferredoxin oxidoreductase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
A7E78_12310	APG27420.1	A7E78_12310	A7E78_05930	2-oxoglutarate dehydrogenase E1 component; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Catalyzes the ferredoxin-dependent oxidative decarboxylation 2-oxoglutarate forming succinyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
A7E78_12310	APG27436.1	A7E78_12310	A7E78_06010	2-oxoglutarate dehydrogenase E1 component; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrolipoyl dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A7E78_12310	APG27879.1	A7E78_12310	A7E78_08550	2-oxoglutarate dehydrogenase E1 component; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
A7E78_12310	APG29001.1	A7E78_12310	A7E78_03150	2-oxoglutarate dehydrogenase E1 component; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoacid:ferredoxin oxidoreductase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
A7E78_12310	APG29002.1	A7E78_12310	A7E78_03155	2-oxoglutarate dehydrogenase E1 component; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoglutarate oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
APG26921.1	A7E78_12310	A7E78_03160	A7E78_12310	3-methyl-2-oxobutanoate dehydrogenase subunit VorB; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoglutarate dehydrogenase E1 component; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
APG26921.1	APG26922.1	A7E78_03160	A7E78_03165	3-methyl-2-oxobutanoate dehydrogenase subunit VorB; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoacid:acceptor oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
APG26921.1	APG27417.1	A7E78_03160	A7E78_05915	3-methyl-2-oxobutanoate dehydrogenase subunit VorB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tungsten formylmethanofuran dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
APG26921.1	APG27418.1	A7E78_03160	A7E78_05920	3-methyl-2-oxobutanoate dehydrogenase subunit VorB; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
APG26921.1	APG27419.1	A7E78_03160	A7E78_05925	3-methyl-2-oxobutanoate dehydrogenase subunit VorB; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoacid:ferredoxin oxidoreductase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
APG26921.1	APG27420.1	A7E78_03160	A7E78_05930	3-methyl-2-oxobutanoate dehydrogenase subunit VorB; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Catalyzes the ferredoxin-dependent oxidative decarboxylation 2-oxoglutarate forming succinyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
APG26921.1	APG27436.1	A7E78_03160	A7E78_06010	3-methyl-2-oxobutanoate dehydrogenase subunit VorB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrolipoyl dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
APG26921.1	APG27879.1	A7E78_03160	A7E78_08550	3-methyl-2-oxobutanoate dehydrogenase subunit VorB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
APG26921.1	APG29001.1	A7E78_03160	A7E78_03150	3-methyl-2-oxobutanoate dehydrogenase subunit VorB; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoacid:ferredoxin oxidoreductase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
APG26921.1	APG29002.1	A7E78_03160	A7E78_03155	3-methyl-2-oxobutanoate dehydrogenase subunit VorB; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoglutarate oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998