STRINGSTRING
RD110_01875 RD110_01875 APW36108.1 APW36108.1 APW36109.1 APW36109.1 APW36175.1 APW36175.1 APW36176.1 APW36176.1 ubiA ubiA coq7 coq7 APW36849.1 APW36849.1 APW40519.1 APW40519.1 APW36900.1 APW36900.1 APW36901.1 APW36901.1 ubiG ubiG APW37206.1 APW37206.1 APW37208.1 APW37208.1 APW37209.1 APW37209.1 secB secB APW38064.1 APW38064.1 APW38065.1 APW38065.1 APW38328.1 APW38328.1 APW38521.1 APW38521.1 APW38711.1 APW38711.1 APW39432.1 APW39432.1 APW39433.1 APW39433.1 ubiB ubiB APW39435.1 APW39435.1 APW39436.1 APW39436.1 ubiE ubiE APW40851.1 APW40851.1 APW39438.1 APW39438.1 APW39439.1 APW39439.1 APW39524.1 APW39524.1 APW40219.1 APW40219.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RD110_01875VanZ family protein; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)
APW36108.1Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
APW36109.1Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S11 family. (393 aa)
APW36175.1LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (320 aa)
APW36176.1Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
ubiA4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. (310 aa)
coq7Demethoxyubiquinone hydroxylase family protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis. (218 aa)
APW36849.1Serine-type D-Ala-D-Ala carboxypeptidase; Penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S11 family. (359 aa)
APW40519.1Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family. (492 aa)
APW36900.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0301 (AlgH) family. (199 aa)
APW36901.1Holliday junction resolvase RuvX; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (140 aa)
ubiGBifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. (238 aa)
APW37206.1Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family. (477 aa)
APW37208.1Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
APW37209.1Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins. (86 aa)
secBProtein-export chaperone SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. (153 aa)
APW38064.1Ubiquinone-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)
APW38065.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0125 (RnfH) family. (116 aa)
APW38328.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)
APW38521.1Tetraacyldisaccharide 4'-kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0434 family. (60 aa)
APW38711.14-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)
APW39432.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
APW39433.1FmdB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)
ubiBUbiquinone biosynthesis regulatory protein kinase UbiB; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. (527 aa)
APW39435.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
APW39436.1Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
ubiEBifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). (243 aa)
APW40851.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
APW39438.1FAD-linked oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1300 aa)
APW39439.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (81 aa)
APW39524.1Ubiquinone biosynthesis protein UbiH; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
APW40219.1D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (508 aa)
Your Current Organism:
Rhodoferax koreense
NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110
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