STRINGSTRING
RD110_01220 RD110_01220 APW35997.1 APW35997.1 APW36871.1 APW36871.1 APW36872.1 APW36872.1 APW36873.1 APW36873.1 APW36882.1 APW36882.1 APW36932.1 APW36932.1 APW36933.1 APW36933.1 APW36934.1 APW36934.1 APW37023.1 APW37023.1 APW40555.1 APW40555.1 APW37219.1 APW37219.1 APW37239.1 APW37239.1 APW37240.1 APW37240.1 APW37252.1 APW37252.1 APW37253.1 APW37253.1 APW40565.1 APW40565.1 APW37266.1 APW37266.1 APW40566.1 APW40566.1 APW37271.1 APW37271.1 APW37272.1 APW37272.1 APW40567.1 APW40567.1 APW40568.1 APW40568.1 APW37273.1 APW37273.1 APW37274.1 APW37274.1 APW37275.1 APW37275.1 APW37276.1 APW37276.1 APW40570.1 APW40570.1 APW37277.1 APW37277.1 APW40571.1 APW40571.1 APW37278.1 APW37278.1 APW40572.1 APW40572.1 APW37279.1 APW37279.1 APW37280.1 APW37280.1 APW37281.1 APW37281.1 APW40573.1 APW40573.1 APW37391.1 APW37391.1 APW37392.1 APW37392.1 APW37393.1 APW37393.1 APW37394.1 APW37394.1 APW38728.1 APW38728.1 APW38730.1 APW38730.1 nuoN nuoN APW38732.1 APW38732.1 APW38733.1 APW38733.1 nuoK nuoK APW38735.1 APW38735.1 nuoI nuoI nuoH nuoH APW38738.1 APW38738.1 APW38739.1 APW38739.1 APW38740.1 APW38740.1 nuoD nuoD nuoC nuoC nuoB nuoB nuoA nuoA APW39073.1 APW39073.1 APW39226.1 APW39226.1 APW39227.1 APW39227.1 APW39228.1 APW39228.1 APW39229.1 APW39229.1 APW39230.1 APW39230.1 APW39231.1 APW39231.1 APW39232.1 APW39232.1 APW39270.1 APW39270.1 APW39271.1 APW39271.1 coaD coaD APW39273.1 APW39273.1 APW39274.1 APW39274.1 APW39275.1 APW39275.1 APW39277.1 APW39277.1 msrQ msrQ msrP msrP APW39343.1 APW39343.1 APW39344.1 APW39344.1 APW39345.1 APW39345.1 APW39364.1 APW39364.1 APW39372.1 APW39372.1 APW39373.1 APW39373.1 APW39464.1 APW39464.1 APW39506.1 APW39506.1 APW39507.1 APW39507.1 APW39508.1 APW39508.1 APW40859.1 APW40859.1 APW39509.1 APW39509.1 APW39510.1 APW39510.1 APW39635.1 APW39635.1 APW40902.1 APW40902.1 APW39717.1 APW39717.1 APW40916.1 APW40916.1 ctaB ctaB APW39789.1 APW39789.1 APW40917.1 APW40917.1 APW39790.1 APW39790.1 APW39791.1 APW39791.1 APW39792.1 APW39792.1 APW39794.1 APW39794.1 APW39795.1 APW39795.1 APW40918.1 APW40918.1 APW39797.1 APW39797.1 APW39828.1 APW39828.1 APW39940.1 APW39940.1 APW39989.1 APW39989.1 APW40938.1 APW40938.1 APW39990.1 APW39990.1 APW39991.1 APW39991.1 APW39992.1 APW39992.1 APW39993.1 APW39993.1 APW39994.1 APW39994.1 APW39995.1 APW39995.1 APW40053.1 APW40053.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RD110_01220DNA repair protein RadA; Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
APW35997.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)
APW36871.1Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
APW36872.1Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
APW36873.1GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (476 aa)
APW36882.1NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
APW36932.1Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (199 aa)
APW36933.1Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (470 aa)
APW36934.1Cytochrome c1; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
APW37023.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (125 aa)
APW40555.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)
APW37219.1NmrA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
APW37239.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
APW37240.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
APW37252.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (110 aa)
APW37253.1Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
APW40565.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)
APW37266.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
APW40566.1Heat-shock protein Hsp20; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the small heat shock protein (HSP20) family. (139 aa)
APW37271.1Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)
APW37272.1Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
APW40567.1Glycoside hydrolase family 43; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
APW40568.1Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (920 aa)
APW37273.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
APW37274.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (516 aa)
APW37275.1Copper-translocating P-type ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (774 aa)
APW37276.1Cytochrome oxidase maturation protein, cbb3-type; Derived by automated computational analysis using gene prediction method: Protein Homology. (45 aa)
APW40570.1Cytochrome-c oxidase, cbb3-type subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family. (480 aa)
APW37277.1Cytochrome-c oxidase, cbb3-type subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
APW40571.1Cbb3-type cytochrome C oxidase subunit 3; Derived by automated computational analysis using gene prediction method: Protein Homology. (45 aa)
APW37278.1Cytochrome-c oxidase, cbb3-type subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (305 aa)
APW40572.1Cytochrome c oxidase accessory protein CcoG; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
APW37279.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (95 aa)
APW37280.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (79 aa)
APW37281.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
APW40573.1Iron permease; Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria; Belongs to the high-potential iron-sulfur protein (HiPIP) family. (102 aa)
APW37391.1DTW domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
APW37392.1Hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)
APW37393.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
APW37394.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)
APW38728.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)
APW38730.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa)
nuoNNADH-quinone oxidoreductase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (495 aa)
APW38732.1NADH-quinone oxidoreductase subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology. (491 aa)
APW38733.1NADH-quinone oxidoreductase subunit L; Derived by automated computational analysis using gene prediction method: Protein Homology. (694 aa)
nuoKNADH-quinone oxidoreductase subunit K; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (102 aa)
APW38735.1NADH:ubiquinone oxidoreductase subunit J; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (224 aa)
nuoINADH-quinone oxidoreductase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (165 aa)
nuoHNADH-quinone oxidoreductase subunit H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. (358 aa)
APW38738.1NADH-quinone oxidoreductase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (713 aa)
APW38739.1NADH-quinone oxidoreductase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (454 aa)
APW38740.1NADH-quinone oxidoreductase subunit E; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
nuoDNADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. (417 aa)
nuoCNADH-quinone oxidoreductase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. (202 aa)
nuoBNADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (159 aa)
nuoANADH-quinone oxidoreductase subunit A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. (119 aa)
APW39073.1acyl-CoA desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
APW39226.1Arsenical resistance protein ArsH; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
APW39227.1Arsenate reductase (glutaredoxin); Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
APW39228.1Arsenical efflux pump membrane protein ArsB; Involved in arsenical resistance. Thought to form the channel of an arsenite pump; Belongs to the ArsB family. (426 aa)
APW39229.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)
APW39230.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (72 aa)
APW39231.1Heat-shock protein Hsp20; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the small heat shock protein (HSP20) family. (133 aa)
APW39232.1Heat-shock protein Hsp20; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the small heat shock protein (HSP20) family. (145 aa)
APW39270.1DTW domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
APW39271.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (794 aa)
coaDPantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. (166 aa)
APW39273.116S rRNA (guanine(966)-N(2))-methyltransferase RsmD; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
APW39274.1Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology. (449 aa)
APW39275.1Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)
APW39277.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
msrQSulfoxide reductase heme-binding subunit YedZ; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalyti [...] (222 aa)
msrPMononuclear molybdenum enzyme YedY; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce bot [...] (332 aa)
APW39343.1C-type cytochrome biogenesis protein CcsB; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)
APW39344.1Cytochrome C biogenesis protein ResB; Derived by automated computational analysis using gene prediction method: Protein Homology. (721 aa)
APW39345.1Cytochrome c4; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
APW39364.1Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (98 aa)
APW39372.1Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)
APW39373.1Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
APW39464.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (111 aa)
APW39506.1Monovalent cation/H+ antiporter subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology. (974 aa)
APW39507.1Na+/H+ antiporter subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)
APW39508.1Monovalent cation/H+ antiporter subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology. (573 aa)
APW40859.1Na+/H+ antiporter subunit E; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)
APW39509.1K+/H+ antiporter subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology. (92 aa)
APW39510.1Na+/H+ antiporter subunit G; Derived by automated computational analysis using gene prediction method: Protein Homology. (115 aa)
APW39635.1Phosphoribosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
APW40902.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
APW39717.1Redoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (186 aa)
APW40916.1SCO family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
ctaBProtoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (311 aa)
APW39789.1Heme A synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
APW40917.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
APW39790.1Transmembrane cytochrome oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
APW39791.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (80 aa)
APW39792.1Cytochrome c oxidase subunit 3; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
APW39794.1Cytochrome c oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
APW39795.1Cytochrome c oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (540 aa)
APW40918.1Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (395 aa)
APW39797.1Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
APW39828.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)
APW39940.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
APW39989.1Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)
APW40938.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)
APW39990.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
APW39991.1Cytochrome o ubiquinol oxidase subunit IV; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)
APW39992.1Cytochrome o ubiquinol oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
APW39993.1Cytochrome o ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family. (669 aa)
APW39994.1Ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
APW39995.1Arabinose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (449 aa)
APW40053.1Cytochrome c5 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
Your Current Organism:
Rhodoferax koreense
NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110
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