13 items (Rhodoferax koreense) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW35925.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (125 aa)
	APW36276.1	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	APW40435.1	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
	APW40629.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	APW40735.1	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (698 aa)
	APW38518.1	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	APW38519.1	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	APW39151.1	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	APW39152.1	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
	APW39153.1	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	APW39154.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (74 aa)
	APW39576.1	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (701 aa)
	APW40905.1	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)

Your Current Organism:

Rhodoferax koreense

NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW35925.1	APW36276.1	RD110_00775	RD110_02835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
APW35925.1	APW38518.1	RD110_00775	RD110_16010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
APW35925.1	APW38519.1	RD110_00775	RD110_16015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
APW35925.1	APW39152.1	RD110_00775	RD110_19645	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
APW35925.1	APW39153.1	RD110_00775	RD110_19650	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
APW35925.1	APW39576.1	RD110_00775	RD110_22145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
APW35925.1	APW40435.1	RD110_00775	RD110_02840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
APW35925.1	APW40735.1	RD110_00775	RD110_15980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
APW36276.1	APW35925.1	RD110_02835	RD110_00775	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
APW36276.1	APW38519.1	RD110_02835	RD110_16015	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
APW36276.1	APW39151.1	RD110_02835	RD110_19640	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725
APW36276.1	APW39153.1	RD110_02835	RD110_19650	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
APW36276.1	APW40435.1	RD110_02835	RD110_02840	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
APW36276.1	APW40629.1	RD110_02835	RD110_11365	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
APW36276.1	APW40735.1	RD110_02835	RD110_15980	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
APW36276.1	APW40905.1	RD110_02835	RD110_23070	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
APW38518.1	APW35925.1	RD110_16010	RD110_00775	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
APW38518.1	APW38519.1	RD110_16010	RD110_16015	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
APW38518.1	APW39151.1	RD110_16010	RD110_19640	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
APW38518.1	APW39153.1	RD110_16010	RD110_19650	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745