(5 nodes) Biopolymer transport protein ExbD/TolR, and MotA/TolQ/ExbB proton channel network (Rhodoferax koreense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW36276.1	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	APW40435.1	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
	APW38518.1	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	APW38519.1	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	APW40905.1	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)

Your Current Organism:

Rhodoferax koreense

NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW36276.1	APW38519.1	RD110_02835	RD110_16015	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
APW36276.1	APW40435.1	RD110_02835	RD110_02840	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
APW36276.1	APW40905.1	RD110_02835	RD110_23070	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
APW38518.1	APW38519.1	RD110_16010	RD110_16015	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
APW38518.1	APW40435.1	RD110_16010	RD110_02840	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
APW38518.1	APW40905.1	RD110_16010	RD110_23070	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
APW38519.1	APW36276.1	RD110_16015	RD110_02835	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
APW38519.1	APW38518.1	RD110_16015	RD110_16010	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
APW38519.1	APW40435.1	RD110_16015	RD110_02840	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
APW38519.1	APW40905.1	RD110_16015	RD110_23070	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
APW40435.1	APW36276.1	RD110_02840	RD110_02835	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
APW40435.1	APW38518.1	RD110_02840	RD110_16010	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
APW40435.1	APW38519.1	RD110_02840	RD110_16015	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
APW40435.1	APW40905.1	RD110_02840	RD110_23070	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
APW40905.1	APW36276.1	RD110_23070	RD110_02835	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
APW40905.1	APW38518.1	RD110_23070	RD110_16010	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
APW40905.1	APW38519.1	RD110_23070	RD110_16015	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
APW40905.1	APW40435.1	RD110_23070	RD110_02840	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590