(22 nodes) Mixed, incl. Nitrogen metabolism, and ferredoxin-NAD(P) reductase activity network (Rhodoferax koreense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW36279.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	APW36280.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
	APW36281.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
	APW36282.1	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (101 aa)
	APW36283.1	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (714 aa)
	APW36789.1	Rubredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (57 aa)
	APW36860.1	2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	APW36959.1	2Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
	APW36960.1	S49 family peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	APW38195.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)
	APW38367.1	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (109 aa)
	APW38577.1	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
	APW38578.1	Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
	APW38579.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
	RD110_16390	Nitrite reductase large subunit; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (930 aa)
	APW38588.1	2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	APW39423.1	Nitrite reductase (NAD(P)H) small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)
	APW39424.1	Nitrite reductase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (841 aa)
	APW39476.1	ferredoxin--NADP(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	APW39638.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (777 aa)
	APW40039.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
	APW40246.1	Indolepyruvate ferredoxin oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; Derived by automated computational analysis using gene prediction method: Protein Homology. (1196 aa)

Your Current Organism:

Rhodoferax koreense

NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW36279.1	APW36280.1	RD110_02860	RD110_02865	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
APW36279.1	APW36281.1	RD110_02860	RD110_02870	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
APW36279.1	APW36282.1	RD110_02860	RD110_02875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	0.547
APW36279.1	APW36283.1	RD110_02860	RD110_02880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.506
APW36280.1	APW36279.1	RD110_02865	RD110_02860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
APW36280.1	APW36281.1	RD110_02865	RD110_02870	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
APW36280.1	APW36282.1	RD110_02865	RD110_02875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	0.747
APW36280.1	APW36283.1	RD110_02865	RD110_02880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.699
APW36281.1	APW36279.1	RD110_02870	RD110_02860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
APW36281.1	APW36280.1	RD110_02870	RD110_02865	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
APW36281.1	APW36282.1	RD110_02870	RD110_02875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	0.778
APW36281.1	APW36283.1	RD110_02870	RD110_02880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.749
APW36281.1	APW38367.1	RD110_02870	RD110_15165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	0.431
APW36282.1	APW36279.1	RD110_02875	RD110_02860	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
APW36282.1	APW36280.1	RD110_02875	RD110_02865	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
APW36282.1	APW36281.1	RD110_02875	RD110_02870	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
APW36282.1	APW36283.1	RD110_02875	RD110_02880	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.743
APW36282.1	APW40246.1	RD110_02875	RD110_26115	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Indolepyruvate ferredoxin oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
APW36283.1	APW36279.1	RD110_02880	RD110_02860	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
APW36283.1	APW36280.1	RD110_02880	RD110_02865	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699