(5 nodes) Mixed, incl. S-adenosylmethionine cycle, and Membrane fusion protein, biotin-lipoyl like domain network (Rhodoferax koreense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RD110_04565	Alpha/beta hydrolase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	APW36569.1	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
	APW36570.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	APW36571.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
	APW40469.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)

Your Current Organism:

Rhodoferax koreense

NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW36569.1	APW36570.1	RD110_04570	RD110_04575	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
APW36569.1	APW36571.1	RD110_04570	RD110_04580	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
APW36569.1	APW40469.1	RD110_04570	RD110_04585	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899
APW36569.1	RD110_04565	RD110_04570	RD110_04565	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
APW36570.1	APW36569.1	RD110_04575	RD110_04570	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
APW36570.1	APW36571.1	RD110_04575	RD110_04580	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
APW36570.1	APW40469.1	RD110_04575	RD110_04585	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819
APW36570.1	RD110_04565	RD110_04575	RD110_04565	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.749
APW36571.1	APW36569.1	RD110_04580	RD110_04570	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
APW36571.1	APW36570.1	RD110_04580	RD110_04575	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
APW36571.1	APW40469.1	RD110_04580	RD110_04585	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
APW36571.1	RD110_04565	RD110_04580	RD110_04565	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
APW40469.1	APW36569.1	RD110_04585	RD110_04570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899
APW40469.1	APW36570.1	RD110_04585	RD110_04575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819
APW40469.1	APW36571.1	RD110_04585	RD110_04580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
APW40469.1	RD110_04565	RD110_04585	RD110_04565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
RD110_04565	APW36569.1	RD110_04565	RD110_04570	Alpha/beta hydrolase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
RD110_04565	APW36570.1	RD110_04565	RD110_04575	Alpha/beta hydrolase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.749
RD110_04565	APW36571.1	RD110_04565	RD110_04580	Alpha/beta hydrolase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
RD110_04565	APW40469.1	RD110_04565	RD110_04585	Alpha/beta hydrolase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748