5 items (Rhodoferax koreense) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW35827.1	PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
	APW35828.1	NADPH-dependent ferric siderophore reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	APW40580.1	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology. (714 aa)
	APW37324.1	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
	APW37325.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (633 aa)

Your Current Organism:

Rhodoferax koreense

NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW35827.1	APW35828.1	RD110_00180	RD110_00185	PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADPH-dependent ferric siderophore reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
APW35828.1	APW35827.1	RD110_00185	RD110_00180	NADPH-dependent ferric siderophore reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
APW35828.1	APW40580.1	RD110_00185	RD110_09065	NADPH-dependent ferric siderophore reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
APW37324.1	APW37325.1	RD110_09070	RD110_09075	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
APW37324.1	APW40580.1	RD110_09070	RD110_09065	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
APW37325.1	APW37324.1	RD110_09075	RD110_09070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
APW37325.1	APW40580.1	RD110_09075	RD110_09065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
APW40580.1	APW35828.1	RD110_09065	RD110_00185	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADPH-dependent ferric siderophore reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
APW40580.1	APW37324.1	RD110_09065	RD110_09070	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
APW40580.1	APW37325.1	RD110_09065	RD110_09075	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784