(61 nodes) Amino acid ABC transporter, permease protein, 3-TM domain, and Bacterial periplasmic substrate-binding proteins network (Rhodoferax koreense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW35802.1	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	APW40364.1	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	APW35803.1	Ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	APW35804.1	Polar amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	APW36289.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	APW36455.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	APW36456.1	Glutamate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
	APW36457.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	APW36458.1	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	APW36466.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
	APW37242.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
	APW37419.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (280 aa)
	APW37420.1	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	APW37421.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	APW37422.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	APW37423.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (250 aa)
	APW40627.1	Histidine/lysine/arginine/ornithine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	APW37709.1	Succinylglutamate desuccinylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
	APW37710.1	Amino acid ABC transporter permease; With HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)
	APW37711.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	APW37712.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (255 aa)
	RD110_11570	Hypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	APW37755.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	APW37756.1	Basic amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (258 aa)
	APW37873.1	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	APW37874.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	APW37875.1	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	APW37876.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	APW37951.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (522 aa)
	APW37954.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	APW37956.1	Cysteine desulfurase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
	APW37957.1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
	APW37958.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	APW37959.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (264 aa)
	glnQ-2	Similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	APW38014.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (273 aa)
	APW40673.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)
	APW38015.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	APW38033.1	Ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
	APW38034.1	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	APW38035.1	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	APW38036.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	APW40679.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	glnQ-3	Similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
	APW38261.1	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	APW38262.1	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	APW38263.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	APW38537.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	APW38538.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
	APW38539.1	Phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	APW38540.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	APW38871.1	ArtI protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	APW39593.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	APW39594.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
	APW39595.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	APW39854.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	APW39855.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	APW39856.1	Hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
	APW39858.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	APW39859.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	APW39860.1	Phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)

Your Current Organism:

Rhodoferax koreense

NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW35802.1	APW35803.1	RD110_00035	RD110_00045	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
APW35802.1	APW35804.1	RD110_00035	RD110_00050	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polar amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
APW35802.1	APW36456.1	RD110_00035	RD110_03945	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
APW35802.1	APW36457.1	RD110_00035	RD110_03950	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.588
APW35802.1	APW36458.1	RD110_00035	RD110_03955	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
APW35802.1	APW37242.1	RD110_00035	RD110_08575	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
APW35802.1	APW37419.1	RD110_00035	RD110_09650	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	0.725
APW35802.1	APW37420.1	RD110_00035	RD110_09655	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
APW35802.1	APW37421.1	RD110_00035	RD110_09660	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
APW35802.1	APW37422.1	RD110_00035	RD110_09665	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
APW35802.1	APW37710.1	RD110_00035	RD110_11295	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; With HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
APW35802.1	APW37711.1	RD110_00035	RD110_11300	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.536
APW35802.1	APW37712.1	RD110_00035	RD110_11305	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	0.793
APW35802.1	APW37755.1	RD110_00035	RD110_11575	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
APW35802.1	APW37756.1	RD110_00035	RD110_11580	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Basic amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	0.976
APW35802.1	APW37873.1	RD110_00035	RD110_12245	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
APW35802.1	APW37874.1	RD110_00035	RD110_12250	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
APW35802.1	APW37875.1	RD110_00035	RD110_12255	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
APW35802.1	APW37876.1	RD110_00035	RD110_12260	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
APW35802.1	APW37957.1	RD110_00035	RD110_12780	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.836