(36 nodes) ABC transporter membrane protein permease protein ArtM/GltK/GlnP/TcyL/YhdX-like, and ABC-type amino acid transport system, ATPase component, HisP-type network (Rhodoferax koreense)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW35802.1	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	APW40364.1	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	APW35803.1	Ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	APW35804.1	Polar amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	APW37419.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (280 aa)
	APW37420.1	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	APW37421.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	APW37422.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	APW37423.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (250 aa)
	RD110_11570	Hypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	APW37755.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	APW37756.1	Basic amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (258 aa)
	APW37873.1	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	APW37874.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	APW37875.1	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	APW37876.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	glnQ-2	Similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	APW38014.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (273 aa)
	APW40673.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)
	APW38015.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	APW38033.1	Ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
	APW38034.1	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	APW38035.1	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	APW38036.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	APW40679.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	glnQ-3	Similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
	APW38261.1	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	APW38262.1	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	APW38263.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	APW38537.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	APW38538.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
	APW38539.1	Phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	APW38540.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	APW39593.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	APW39594.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
	APW39595.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)

Your Current Organism:

Rhodoferax koreense

NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW35802.1	APW35803.1	RD110_00035	RD110_00045	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
APW35802.1	APW35804.1	RD110_00035	RD110_00050	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polar amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
APW35802.1	APW37419.1	RD110_00035	RD110_09650	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	0.725
APW35802.1	APW37420.1	RD110_00035	RD110_09655	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
APW35802.1	APW37421.1	RD110_00035	RD110_09660	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
APW35802.1	APW37422.1	RD110_00035	RD110_09665	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
APW35802.1	APW37755.1	RD110_00035	RD110_11575	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
APW35802.1	APW37756.1	RD110_00035	RD110_11580	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Basic amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	0.976
APW35802.1	APW37873.1	RD110_00035	RD110_12245	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
APW35802.1	APW37874.1	RD110_00035	RD110_12250	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
APW35802.1	APW37875.1	RD110_00035	RD110_12255	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
APW35802.1	APW37876.1	RD110_00035	RD110_12260	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
APW35802.1	APW38014.1	RD110_00035	RD110_13090	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	0.788
APW35802.1	APW38015.1	RD110_00035	RD110_13100	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.523
APW35802.1	APW38033.1	RD110_00035	RD110_13215	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
APW35802.1	APW38034.1	RD110_00035	RD110_13220	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
APW35802.1	APW38035.1	RD110_00035	RD110_13225	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
APW35802.1	APW38262.1	RD110_00035	RD110_14540	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
APW35802.1	APW38263.1	RD110_00035	RD110_14545	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
APW35802.1	APW38537.1	RD110_00035	RD110_16110	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.502