(5 nodes) Mixed, incl. ICL/PEPM domain, and Cysteine-rich domain network (Rhodoferax koreense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW35951.1	Glycolate oxidase subunit GlcE; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
	APW35953.1	Glycolate oxidase iron-sulfur subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
	APW40414.1	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)
	APW40560.1	Isocitrate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (439 aa)
	glcB	Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. (724 aa)

Your Current Organism:

Rhodoferax koreense

NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW35951.1	APW35953.1	RD110_00935	RD110_00945	Glycolate oxidase subunit GlcE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycolate oxidase iron-sulfur subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
APW35951.1	APW40414.1	RD110_00935	RD110_01980	Glycolate oxidase subunit GlcE; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
APW35951.1	APW40560.1	RD110_00935	RD110_08490	Glycolate oxidase subunit GlcE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Isocitrate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
APW35951.1	glcB	RD110_00935	RD110_25305	Glycolate oxidase subunit GlcE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.	0.913
APW35953.1	APW35951.1	RD110_00945	RD110_00935	Glycolate oxidase iron-sulfur subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycolate oxidase subunit GlcE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
APW35953.1	APW40414.1	RD110_00945	RD110_01980	Glycolate oxidase iron-sulfur subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
APW35953.1	APW40560.1	RD110_00945	RD110_08490	Glycolate oxidase iron-sulfur subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Isocitrate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
APW35953.1	glcB	RD110_00945	RD110_25305	Glycolate oxidase iron-sulfur subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.	0.931
APW40414.1	APW35951.1	RD110_01980	RD110_00935	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycolate oxidase subunit GlcE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
APW40414.1	APW35953.1	RD110_01980	RD110_00945	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycolate oxidase iron-sulfur subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
APW40414.1	APW40560.1	RD110_01980	RD110_08490	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Isocitrate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
APW40414.1	glcB	RD110_01980	RD110_25305	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.	0.913
APW40560.1	APW35951.1	RD110_08490	RD110_00935	Isocitrate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycolate oxidase subunit GlcE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
APW40560.1	APW35953.1	RD110_08490	RD110_00945	Isocitrate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycolate oxidase iron-sulfur subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
APW40560.1	APW40414.1	RD110_08490	RD110_01980	Isocitrate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
APW40560.1	glcB	RD110_08490	RD110_25305	Isocitrate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.	0.995
glcB	APW35951.1	RD110_25305	RD110_00935	Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.	Glycolate oxidase subunit GlcE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
glcB	APW35953.1	RD110_25305	RD110_00945	Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.	Glycolate oxidase iron-sulfur subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
glcB	APW40414.1	RD110_25305	RD110_01980	Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.	FAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
glcB	APW40560.1	RD110_25305	RD110_08490	Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.	Isocitrate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995