(6 nodes) TRAP transporter solute receptor, DctP family, and C4-dicarboxylate transport network (Rhodoferax koreense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APW36460.1	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)
	APW36461.1	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (432 aa)
	APW36462.1	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
	APW37899.1	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
	APW37900.1	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	APW37901.1	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)

Your Current Organism:

Rhodoferax koreense

NCBI taxonomy Id: 1842727
Other names: JCM 31441, KCTC 52288, R. koreense, Rhodoferax sp. DCY110, strain DCY110

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APW36460.1	APW36461.1	RD110_03965	RD110_03970	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
APW36460.1	APW36462.1	RD110_03965	RD110_03975	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
APW36460.1	APW37899.1	RD110_03965	RD110_12420	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
APW36460.1	APW37900.1	RD110_03965	RD110_12425	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
APW36461.1	APW36460.1	RD110_03970	RD110_03965	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
APW36461.1	APW36462.1	RD110_03970	RD110_03975	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
APW36461.1	APW37900.1	RD110_03970	RD110_12425	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.616
APW36461.1	APW37901.1	RD110_03970	RD110_12430	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
APW36462.1	APW36460.1	RD110_03975	RD110_03965	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
APW36462.1	APW36461.1	RD110_03975	RD110_03970	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
APW36462.1	APW37899.1	RD110_03975	RD110_12420	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
APW36462.1	APW37901.1	RD110_03975	RD110_12430	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
APW37899.1	APW36460.1	RD110_12420	RD110_03965	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
APW37899.1	APW36462.1	RD110_12420	RD110_03975	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
APW37899.1	APW37900.1	RD110_12420	RD110_12425	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
APW37899.1	APW37901.1	RD110_12420	RD110_12430	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
APW37900.1	APW36460.1	RD110_12425	RD110_03965	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
APW37900.1	APW36461.1	RD110_12425	RD110_03970	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.616
APW37900.1	APW37899.1	RD110_12425	RD110_12420	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
APW37900.1	APW37901.1	RD110_12425	RD110_12430	TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903